1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttaacaaacactataacctcgattagcacacaagactaaagttgtaggagatcagacatatcgtacatcacttattgcgtgtattggcaaattattgcagGCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACCTTAAAGAGGCCGTGACATACATACAGCAGGGTCATGTGCGTGTAGGCCCAGAG
species | Oryza sativa |
transcript | LOC_Os04g56670.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAAAGAGCCTGTTAACATGTGAAAAACTTTCAGTGAGCTCCTTTTGCAG GCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACCTTAAEST: gi|218503821|gb|FG944828.1|FG944828
genomic: AAAAAGAGCCTGTTAACATGTGAAAAACTTTCAGTGAGCTCCTTTTGCAGgtcctttctc ... attattgcagGCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACCTTAA
EST: AAAAAGAGCCTGTTAACATGTGAAAAACTTTCAGTGAGCTCCTTTTGCAG GCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACCTTAAEST: gi|33660819|gb|CF291786.1|CF291786
genomic: AAAAAGAGCCTGTTAACATGTGAAAAACTTTCAGTGAGCTCCTTTTGCAGgtcctttctc ... attattgcagGCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACCTTAA
EST: AAAAAGAGCCTGTTAACATGTGAAAAACTTTCAGTGAGCTCCTTTTGCAG GCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACCTTEST: gi|87032242|gb|CI262024.1|CI262024
genomic: AAAAAGAGCCTGTTAACATGTGAAAAACTTTCAGTGAGCTCCTTTTGCAGgtcctttctc ... attattgcagGCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACCTT
EST: AAAAAGAGCCTGTTAACATGTGAAAAACTTTCAGTGAGCTCCTTTTGCAG GCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACCTTAAEST: gi|86855599|gb|CI268926.1|CI268926
genomic: AAAAAGAGCCTGTTAACATGTGAAAAACTTTCAGTGAGCTCCTTTTGCAGgtcctttctc ... attattgcagGCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACCTTAA
EST: AAAAAGAGCCTGTTAACATGTGAAAAACTTTCAGTGAGCTCCTTTTGCAG GCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACCTTAAEST: gi|88221415|gb|CI221371.1|CI221371
genomic: AAAAAGAGCCTGTTAACATGTGAAAAACTTTCAGTGAGCTCCTTTTGCAGgtcctttctc ... attattgcagGCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACCTTAA
EST: AAAAAGAGCCTGTTAACATGTGAAAAACTTTCAGTGAGCTCCTTTTGCAG GCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACCTTAAEST: gi|33693679|gb|CF321918.1|CF321918
genomic: AAAAAGAGCCTGTTAACATGTGAAAAACTTTCAGTGAGCTCCTTTTGCAGgtcctttctc ... attattgcagGCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACCTTAA
EST: AAAAAGAGCCTGTTAACATGTGAAAAACTTTCAGTGAGCTCCTTTTGCAG GCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACCTTEST: gi|55413423|gb|CV725799.1|CV725799
genomic: AAAAAGAGCCTGTTAACATGTGAAAAACTTTCAGTGAGCTCCTTTTGCAGgtcctttctc ... attattgcagGCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACCTT
EST: AAAAAGAGCCTGTTAACATGTGAAAAACTTTCAGTGAGCTCCTTTTGCAG GCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACC
genomic: AAAAAGAGCCTGTTAACATGTGAAAAACTTTCAGTGAGCTCCTTTTGCAGgtcctttctc ... attattgcagGCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACC
aggagatcagacatatcgtacatcacttattgcgtgtattggcaaattattgcagGCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACCTTAAAGAGGCCGTGACATACATACAGCAGGGTCATGTGCGTGTAGGCCCAGAG
aaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaacaaacactataacctcgattagcacacaagactaaagttgtaggagatcagacatatcgtacatcacttattgcgtgtattggcaaattattgcagGCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCGCGGAGCACCTTAAAGAGGCCGTGACATACATACAGCAGGGTCATGTGCGTGTAGGCCCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
-taacaaa
- - - - - - - - - - - - - cacacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcgtg