1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttttttacattgcgccattgctaaattattattcgtaactcgctgctagattttgttttttaacactatgtttgtttttggtaatttttctaaacctcagGTAATCCTAGAGGAAGCAGTTGCATAGCAGTGGAGATAAAG
species | Oryza sativa |
transcript | LOC_Os04g56580.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCTGGAGCTGATTCTGCTCTTCTAATTTCTGACCACACATTATTTTCCG GTAATCCTAGAGGAAGCAGTTGCATAGCAGTGGAGATAAAG
genomic: TGCTGGAGCTGATTCTGCTCTTCTAATTTCTGACCACACATTATTTTCCGgtaaagtctt ... taaacctcagGTAATCCTAGAGGAAGCAGTTGCATAGCAGTGGAGATAAAG
ctagattttgttttttaacactatgtttgtttttggtaatttttctaaacctcagGTAATCCTAGAGGAAGCAGTTGCATAGCAGTGGAGATAAAG
ttctaaa putative branch site (score: 50)
tttttct CT-rich tract
ttttgttttttaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttacattgcgccattgctaaattattattcgtaactcgctgctagattttgttttttaacactatgtttgtttttggtaatttttctaaacctcagGTAATCCTAGAGGAAGCAGTTGCATAGCAGTGGAGATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - tgcgcca
- - - - - - - - -ttgctaa
- - - - - - - - - - - - - - - - - - - - -gctgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt