1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaattaactctcatgcatatatataaagatggatttattacatatttacaatgcatgcatgatcaaaatatatagctcctgattgatgcaagtgtgtagtaaaagcatgtgcatcatgcgtatatgtgtgtgtgtttttggttgatgtatctttatggggcaagctgtttataatctttcagGTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAGGAGTTTGTAGCTTCACTTAGGAG
species | Oryza sativa |
transcript | LOC_Os04g55970.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCTTGCCGCGTTGAAGTACTGGGGTCCTAGCACCACAACCAACTTTCCG GTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAGEST: gi|3760180|gb|C97438.1|C97438
genomic: ATCTTGCCGCGTTGAAGTACTGGGGTCCTAGCACCACAACCAACTTTCCGgtaattaact ... aatctttcagGTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAG
EST: ATCTTGCCGCGTTGAAGTACTGGGGTNCTAGCACCACAACCAACTTTCCG GTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAGEST: gi|33796931|gb|CF324329.1|CF324329
genomic: ATCTTGCCGCGTTGAAGTACTGGGGTCCTAGCACCACAACCAACTTTCCGgtaattaact ... aatctttcagGTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAG
EST: ATCTTGCCGCGTTGAAGTACTGGGGTCCTAGCACCACAACCAACTTTCCG GTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAG
genomic: ATCTTGCCGCGTTGAAGTACTGGGGTCCTAGCACCACAACCAACTTTCCGgtaattaact ... aatctttcagGTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAG
gtgtgtgtttttggttgatgtatctttatggggcaagctgtttataatctttcagGTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAGGAGTTTGTAGCTTCACTTAGGAG
ggttgat putative branch site (score: 5)
tctttc putative PPT
tgtttataatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattaactctcatgcatatatataaagatggatttattacatatttacaatgcatgcatgatcaaaatatatagctcctgattgatgcaagtgtgtagtaaaagcatgtgcatcatgcgtatatgtgtgtgtgtttttggttgatgtatctttatggggcaagctgtttataatctttcagGTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAGGAGTTTGTAGCTTCACTTAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC