1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tcatagtgtcatcgtcaatccgttgcaaagattttcgaagtttttagcttgaaatttgagtaaaaatggtgtgtgatttgatgtgttggggagagtgcagAACCAGCATGAGAGGCACGAGAACTCGCAGCTGCGGTCGGATAACGAGAAGCTCCGGGCCGAGAACATGCGGTACAAGGAGGCCCTGAGCAGCGCCTCCT
species | Oryza sativa |
transcript | LOC_Os04g53540.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCCTCTCCAAGTGAAGTTCTGGTTCCAGAACAAGCGCACCCAAATGAAG AACCAGCATGAGAGGCACGAGAACTCGCAGCTGCGGTCGGATAACGAGAAGEST: gi|58671274|gb|CK059960.1|CK059960
genomic: AGCCTCTCCAAGTGAAGTTCTGGTTCCAGAACAAGCGCACCCAAATGAAGgtgaaaaaac ... gagagtgcagAACCAGCATGAGAGGCACGAGAACTCGCAGCTGCGGTCGGATAACGAGAAG
EST: AGCCTCTCCAAGTGAAGTTCTGGTTCCAGAACAAGCGCACCCAAATGAAG AACCAGCATGAGAGGCACGAGAACTCGCAGCTGCGGTCGGATAACGAGAAG
genomic: AGCCTCTCCAAGTGAAGTTCTGGTTCCAGAACAAGCGCACCCAAATGAAGgtgaaaaaac ... gagagtgcagAACCAGCATGAGAGGCACGAGAACTCGCAGCTGCGGTCGGATAACGAGAAG
agcttgaaatttgagtaaaaatggtgtgtgatttgatgtgttggggagagtgcagAACCAGCATGAGAGGCACGAGAACTCGCAGCTGCGGTCGGATAACGAGAAGCTCCGGGCCGAGAACATGCGGTACAAGGAGGCCCTGAGCAGCGCCTCCT
atttgat putative branch site (score: 5)
aaatttgagtaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatagtgtcatcgtcaatccgttgcaaagattttcgaagtttttagcttgaaatttgagtaaaaatggtgtgtgatttgatgtgttggggagagtgcagAACCAGCATGAGAGGCACGAGAACTCGCAGCTGCGGTCGGATAACGAGAAGCTCCGGGCCGAGAACATGCGGTACAAGGAGGCCCTGAGCAGCGCCTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG