Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtaaacaattatggattctacttatgtttcttttccttttttttccccatttctgacttgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG

Basic information

species Oryza sativa
transcript LOC_Os04g52361.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g52361.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G019325_T01 (Zea mays), 3'ss of exon 4
gcaagtaaacaatt-atggattcta--cttatgtttcttttccttttt---tttccccatttctgacttgggttgca-----gGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG
| ||||  ||  ||  ||||  |||  || ||| ||  | | | |      |||     ||| | |  |  ||| ||     ||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
gtaagtggactctttgtggaacctaggctcatgctttgtcttcctaaggaattttgttgtttttaatataagttacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG

upper sequence: LOC_Os04g52361.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G044800_T01 (Zea mays), 3'ss of exon 4
gcaagtaaacaatt-atggattcta--cttatgtttcttttcctt-------ttttttccccatttctgacttgggt----tgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG
| ||||  ||  ||  ||||  |||  || ||| ||  | |            ||| |  |  ||  | ||| | ||    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
gtaagtggactgtttgtggaacctagactcatggtttgtctttcaaaatgaactttctaacatttagttactcgtgtcccttgcagGTATGAGAAGAGGCACTCCAACATTCCTGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG

upper sequence: LOC_Os04g52361.1 (Oryza sativa), 3'ss of exon 4
lower sequence: AT3G48930.1 (Arabidopsis thaliana), 3'ss of exon 4
gcaagt--aaacaattatgga-ttctacttat-gtttcttttccttttttttccc------catttctgacttgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG
| || |  | ||| |     | ||||    || |  ||||   | ||  | |          | |      || | |   |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||| |||||| ||||||||||||| |||||
gtaaattcatacattctcatacttctttccatagagtcttacacattgatgtttaagaaagtaatatcctttttgttcttagGTATGAGAAGAGGCATTCAAACATTCCGGCTCATGTCTCACCATGCTTCCGTGTTAAGGAAGGAGACCATATCATCATTGGCCAATGCAG

upper sequence: LOC_Os04g52361.1 (Oryza sativa), 3'ss of exon 4
lower sequence: AT5G23740.1 (Arabidopsis thaliana), 3'ss of exon 4
gcaagtaaacaattatggattc-tacttatgtttcttttccttt----tttttccccatttctga-----------cttgggttgc-----agGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG
| ||||| |   | ||| |    |  |  || |     | |       | |  |  || | ||||           |||   ||       || ||||||||||| ||||||||||| || || || ||||| || || |||||||||||||||||||||||||||||||||||||| |||||
gtaagtacattgtgatgaacctatgttcttgatagagctgcgcaaagatataacatcaatgctgataaacgattatcttaaatttttcattagATATGAGAAGAGACATTCCAACATCCCTGCCCATGTCTCACCGTGTTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAATGCAG

upper sequence: LOC_Os04g52361.1 (Oryza sativa), 3'ss of exon 4
lower sequence: AT4G30800.1 (Arabidopsis thaliana), 3'ss of exon 4
gcaagtaaa-caattatgg-attctacttatgtttcttttcctttttt----ttccccatttctgacttgggttg---cagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG
| ||    | |  || ||  ||| |  | |  ||   |   ||| |||      | |||  |      |   |     ||| |||||||| || || || |||||||| ||||| || ||||| |||||||||||||| ||||| || | ||| | |||||| || |||||
gtaaaaggatcggttttgttattgtgttcaaattctctcagcttatttgaaaccctccagctaaatgcttaatcctaccagATATGAGAAAAGACACTCAAACATTCCTGCTCATGTTTCCCCGTGCTTCCGTGTCAAAGAAGGAGATCGTGTTACCATTGGGCAATGCAG

upper sequence: LOC_Os04g52361.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv04s0008g06220.t01 (Vitis vinifera), 3'ss of exon 4
gcaagtaaacaatt--atggattctacttatgtttcttttccttttttttccc----------catttctgacttgggttgc------agGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG
| | | || | |||  || || |  |  | ||||| |    ||  ||| ||             | |  | | |||  |||       || |||||||||||||| || || || || || ||  | |||||||||||||||||||| || ||||| ||||| || ||||||||||||||
gtagg-aaccgatttaattgaatgaatctttgtttttcgggctcctttctcttgtatggaatataatattaaattgtattgtcactctagATATGAGAAGAGGCACTCAAATATACCAGCACATATATCCCCATGCTTCCGTGTCAAAGAGGGTGATCATGTTATTATTGGCCAGTGCAG

upper sequence: LOC_Os04g52361.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv11s0118g00680.t01 (Vitis vinifera), 3'ss of exon 4
----------------------gcaagtaaacaattatggattctacttatgtttcttttccttttttttccccatttctgacttgggttgca----gGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG
                      |  | |    | || |   |||  |  |  || ||||||   |  ||  ||  ||| |    |  | ||||    | |||||||||||||| || |||||||| ||||||   || |||||||||||||| |||||||| || ||||| || ||||||||||||||
gcatgttcctccagttatagttgtgaatgggtatttttactttccccagaatttgcttttcaagtagttgaccattttttcttctttgctgcattcagATATGAGAAGAGGCACTCAAACATTCCTGCTCACACATCGCCATGCTTCCGTGTGAAGGAAGGAGATCATGTTATTATTGGCCAGTGCAG

upper sequence: LOC_Os04g52361.1 (Oryza sativa), 3'ss of exon 4
lower sequence: PP1S79_58V6.1 (Physcomitrella patens), 3'ss of exon 4
-----------------------------------------------------------------------------------------------------------gcaagtaaacaattatg--gattctacttatgtttcttttccttttttttccccatttctgacttgggtt---gcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG
                                                                                                              |    |||||| |   | | || |||| |     |  |  ||| ||  |  |   || | ||   ||   |||||||||||||||||||||||||| |  | || || ||||||||   ||||||||| || || |||||| | || ||||| ||||| |||||
gtgatattatcataattcatgcagcttgcacaatttttccgcgatggcgcttgctagaaaatttgcggcatagcttctggagaagattgtcagatgtcattaattcaatgatgtgacaattgtcttggtact-cttacgcggtgtccctgtttgttcacaaaaccctaaattctatttttgcagGTATGAGAAGAGGCATTCCAACTTAGCTGCCCATGTCTCCCCTGCCTTCCGTGTGAAAGAGGGTGACAAGGTTATCATCGGCCAATGCAG

upper sequence: LOC_Os04g52361.1 (Oryza sativa), 3'ss of exon 4
lower sequence: PP1S51_307V6.1 (Physcomitrella patens), 3'ss of exon 4
-------------------------------------------------------------------------gcaagtaaaca-attatggattctacttatgtttcttttccttttttttccccatttct--gacttgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG
                                                                            | | |||     ||  ||| | |      | | ||  || ||||  |  |||  ||   | |    ||||||||| ||||||||||| || ||| |  | || |||||||||||    |||||||| ||||| |||||| | |||||||||||||| |||||
gtgggttttccttgcccctttcaattcgcattgtttaattgcttgactccataatatctgcaggattactgttttgaatgaacttgagatcaattgtgcgacacgtgcattgactattttcccatcatgacttgaattcctcttgcagGTACGAGAAGAGGCACTCAAACTTGGCCGCCCACGTCTCCCCTGCTTTCCGTGTTAAGGAGGGTGACAAGGTCATCATTGGCCAATGCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86530213|gb|CI170419.1|CI170419
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88211180|gb|CI210820.1|CI210820
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88562277|gb|CI492994.1|CI492994
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88483892|gb|CI421163.1|CI421163
EST:     TTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: TTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88564115|gb|CI494832.1|CI494832
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88373020|gb|CI501014.1|CI501014
EST:     ACTATCATTGTTCCCAGGAACTACCTCCACTTTNTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88670225|gb|CI723473.1|CI723473
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCA
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCA
EST: gi|88292354|gb|CI500302.1|CI500302
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|87026526|gb|CI252480.1|CI252480
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88565701|gb|CI496418.1|CI496418
EST:     CTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: CTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88479521|gb|CI416792.1|CI416792
EST:     ATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88564883|gb|CI495600.1|CI495600
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88414388|gb|CI691548.1|CI691548
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACA
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACA
EST: gi|88373613|gb|CI506040.1|CI506040
EST:     TTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACTTCTCCCCATGCTTCCG
genomic: TTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88578563|gb|CI687500.1|CI687500
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|86423515|gb|CI062276.1|CI062276
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|86507849|gb|CI150482.1|CI150482
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88979376|gb|CI025878.1|CI025878
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88285233|gb|CI504904.1|CI504904
EST:     TTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: TTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|86513920|gb|CI156553.1|CI156553
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|4716480|gb|AU057596.1|AU057596
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88561804|gb|CI492521.1|CI492521
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCNACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|86257119|gb|CI061882.1|CI061882
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88567643|gb|CI498360.1|CI498360
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88673013|gb|CI727128.1|CI727128
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTC
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTC
EST: gi|88489614|gb|CI426886.1|CI426886
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88467949|gb|CI509764.1|CI509764
EST:     ACTATCATTGTTCCCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|86518147|gb|CI158353.1|CI158353
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGGAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88670002|gb|CI724118.1|CI724118
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGG
EST: gi|86528901|gb|CI169107.1|CI169107
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAGATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88567737|gb|CI498454.1|CI498454
EST:     ACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88225902|gb|CI225818.1|CI225818
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88563346|gb|CI494063.1|CI494063
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCCACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|87025091|gb|CI263599.1|CI263599
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88576375|gb|CI670520.1|CI670520
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88425112|gb|CI562427.1|CI562427
EST:     GGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: GGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|86530419|gb|CI170625.1|CI170625
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|87030607|gb|CI255036.1|CI255036
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88567929|gb|CI498646.1|CI498646
EST:     CGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: CGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88483762|gb|CI421033.1|CI421033
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88518890|gb|CI446544.1|CI446544
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|86835368|gb|CI346835.1|CI346835
EST:     ACTATCATTGTTCGCA-GAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|86602181|gb|CI260651.1|CI260651
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88568711|gb|CI499428.1|CI499428
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|38474928|gb|CF959061.1|CF959061
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88542156|gb|CI471465.1|CI471465
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCNACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88503163|gb|CI430669.1|CI430669
EST:     GTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: GTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|86419278|gb|CI054079.1|CI054079
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|86822694|gb|CI251785.1|CI251785
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88268189|gb|CI377926.1|CI377926
EST:     ACTATCATTGTTCGCA-GAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACCTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88566162|gb|CI496879.1|CI496879
EST:     TTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: TTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|33660458|gb|CF291425.1|CF291425
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88318483|gb|CI505887.1|CI505887
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88318966|gb|CI510761.1|CI510761
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|3763186|gb|AU029938.1|AU029938
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88670956|gb|CI725072.1|CI725072
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCANGTCT
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCT
EST: gi|88303277|gb|CI668925.1|CI668925
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGGTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88418533|gb|CI504157.1|CI504157
EST:     TTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: TTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88204984|gb|CI204833.1|CI204833
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88665722|gb|CI715878.1|CI715878
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCG
EST: gi|88483223|gb|CI420494.1|CI420494
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88517294|gb|CI444948.1|CI444948
EST:     TATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: TATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88665678|gb|CI715834.1|CI715834
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACAT
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACAT
EST: gi|88211424|gb|CI211064.1|CI211064
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|8527888|gb|AU092703.1|AU092703
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88244400|gb|CI243522.1|CI243522
EST:     ACTATCATTGTTCGCAGGAGCTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|5005510|gb|AU070275.1|AU070275
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|4716481|gb|AU057597.1|AU057597
EST:     CATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: CATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88293726|gb|CI507835.1|CI507835
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88205590|gb|CI205439.1|CI205439
EST:     ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCG
EST: gi|88669454|gb|CI723372.1|CI723372
EST:     ACTATCATTGTCCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAG                         GTATGAGAAGAGGCATTCCAACATTCCG
genomic: ACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 74 (downstream exon)
Score: 589

TCAGAGGCAGAATCATTGCTGGAACATGCCATAGTGCTAAGATGAACAGGACTATCATTGTTCGCAGGAACTACCTCCACTTTGTGAAGAAATATCAGAGgcaagtaaac ... tgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattctacttatgtttcttttccttttttttccccatttctgacttgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG
                                     ttctgac  putative branch site (score: 589)
       cttatgtttcttttcc  CT-rich tract
                 ttttcctttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcaagtaaacaattatggattctacttatgtttcttttccttttttttccccatttctgacttgggttgcagGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA