1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgcaccaaataacttgccttctcatctctatatcgtttgtgctgtataccctgaattttgggtgaacagacactacaggttttgatattaggaatgagcaaattttgaaattattgtgcgtgacccaatatttattgccgcctgcattttgtagGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTGATGTTATTCCTGCTGCGAAGC
species | Oryza sativa |
transcript | LOC_Os04g51310.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAG GTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATEST: gi|29688719|gb|CB684994.1|CB684994
genomic: CTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGgtttgcacca ... cattttgtagGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGAT
EST: CTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAG GTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATEST: gi|29659389|gb|CB655664.1|CB655664
genomic: CTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGgtttgcacca ... cattttgtagGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGAT
EST: CTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAG GTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATEST: gi|29679484|gb|CB675759.1|CB675759
genomic: CTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGgtttgcacca ... cattttgtagGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGAT
EST: CTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAG GTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATEST: gi|29679485|gb|CB675760.1|CB675760
genomic: CTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGgtttgcacca ... cattttgtagGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGAT
EST: CTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAG GTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGAT
genomic: CTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGgtttgcacca ... cattttgtagGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGAT
aaattttgaaattattgtgcgtgacccaatatttattgccgcctgcattttgtagGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTGATGTTATTCCTGCTGCGAAGC
aatatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcaccaaataacttgccttctcatctctatatcgtttgtgctgtataccctgaattttgggtgaacagacactacaggttttgatattaggaatgagcaaattttgaaattattgtgcgtgacccaatatttattgccgcctgcattttgtagGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTGATGTTATTCCTGCTGCGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC