1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgagaccaccagctgctcactgacgtttactgcaccactactactagtccacgctgctactactactactggctagagagtgtacttttgctgattttctttgtgtggccacgagcagATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAG
species | Oryza sativa |
transcript | LOC_Os04g48880.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAG ATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGAEST: gi|88721251|gb|CI744550.1|CI744550
genomic: GCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAGgtacgagacc ... ccacgagcagATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGA
EST: GCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAG ATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGAEST: gi|38468918|gb|CF953049.1|CF953049
genomic: GCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAGgtacgagacc ... ccacgagcagATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGA
EST: GCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAG ATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGAEST: gi|88245426|gb|CI245275.1|CI245275
genomic: GCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAGgtacgagacc ... ccacgagcagATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGA
EST: GTGGCCGCGGCCCACAAG ATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGAEST: gi|86478555|gb|CI121188.1|CI121188
genomic: GTGGCCGCGGCCCACAAGgtacgagacc ... ccacgagcagATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGA
EST: GCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAG ATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGAEST: gi|87022123|gb|CI259195.1|CI259195
genomic: GCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAGgtacgagacc ... ccacgagcagATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGA
EST: CATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAG ATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGAEST: gi|29684804|gb|CB681079.1|CB681079
genomic: CATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAGgtacgagacc ... ccacgagcagATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGA
EST: GCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAG ATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGA
genomic: GCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAGgtacgagacc ... ccacgagcagATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGA
tactactggctagagagtgtacttttgctgattttctttgtgtggccacgagcagATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAG
tgctgat putative branch site (score: 9)
attttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgagaccaccagctgctcactgacgtttactgcaccactactactagtccacgctgctactactactactggctagagagtgtacttttgctgattttctttgtgtggccacgagcagATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAG
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