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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttactagtactagctcgcacaaaactgctagataaatatcgatcagatagggttcagaatttgctgtgcaacagtttatgctactgattgcattggatccaattatagcaccccatgcatgttttgtatcaaaacgtgcgttgctaaaccaatcatacgcgcacatgctcctattatgtagGTCATAAACGAGACGGTCCGTTTGGCCAACATCGCTCCTGTCATCTTCAGAAAGGCACTTAAAGACATACGGTTCAATG

Basic information

species Oryza sativa
transcript LOC_Os04g48210.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88666016|gb|CI716172.1|CI716172
EST:     TACATAGAATCACATGGAAGGAGTACAAATCCATGGCATTCACATCTCAG                         GTCATAAACGAGACGGTCCGTTTGGCCAACATCGCTCCTGTCATCTTCAGA
genomic: TAGATAGAATCACATGGAAGGAGTACAAATCCATGGCATTCACATCTCAGgttagttact ... tattatgtagGTCATAAACGAGACGGTCCGTTTGGCCAACATCGCTCCTGTCATCTTCAGA
EST: gi|88671466|gb|CI725582.1|CI725582
EST:     TAGATAGAATCACATGGAAGGAGTACAAATCCATGGCATTCACATCTCAG                         GTCATAAACGAGACGGTCCGTTTGGCCAACATCGCTCCTGTCATCTTCAGA
genomic: TAGATAGAATCACATGGAAGGAGTACAAATCCATGGCATTCACATCTCAGgttagttact ... tattatgtagGTCATAAACGAGACGGTCCGTTTGGCCAACATCGCTCCTGTCATCTTCAGA
EST: gi|88972545|gb|CI717285.1|CI717285
EST:     TAGATAGAATCACATGGAAGGAGTACAAATCCATGGCATTCACATCTCAG                         GTCATAAACGAGACGGTCCGTTTGGCCAACATCGCTCCTGTCATCTTCAGA
genomic: TAGATAGAATCACATGGAAGGAGTACAAATCCATGGCATTCACATCTCAGgttagttact ... tattatgtagGTCATAAACGAGACGGTCCGTTTGGCCAACATCGCTCCTGTCATCTTCAGA
EST: gi|88688393|gb|CI731969.1|CI731969
EST:     TAGATAGAATCACATGGAAGGAGTACAAATCCATGGCATTCACATCTCAG                         GTCATAAACGAGACGGTCCGTTTGGCCAACATCGCTCCTGTCATCTTCAGA
genomic: TAGATAGAATCACATGGAAGGAGTACAAATCCATGGCATTCACATCTCAGgttagttact ... tattatgtagGTCATAAACGAGACGGTCCGTTTGGCCAACATCGCTCCTGTCATCTTCAGA
EST: gi|88693862|gb|CI735439.1|CI735439
EST:     TAGATAGAATCACATGGAAGGAGTACAAATCCATGGCATTCACATCTCAG                         GTCATAAACGAGACGGTCCGTTTGGCCAACATCGCTCCTGTCATCTTCAGA
genomic: TAGATAGAATCACATGGAAGGAGTACAAATCCATGGCATTCACATCTCAGgttagttact ... tattatgtagGTCATAAACGAGACGGTCCGTTTGGCCAACATCGCTCCTGTCATCTTCAGA
EST: gi|88672624|gb|CI726740.1|CI726740
EST:     TAGATAGAATCACATGGAAGGAGTACAAATCCATGGCATTCACATCTCAG                         GTCATACACGAGACGGTCCGTTTGGCCAACATCGCTCCTGTCATCTTCAGA
genomic: TAGATAGAATCACATGGAAGGAGTACAAATCCATGGCATTCACATCTCAGgttagttact ... tattatgtagGTCATAAACGAGACGGTCCGTTTGGCCAACATCGCTCCTGTCATCTTCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcaaaacgtgcgttgctaaaccaatcatacgcgcacatgctcctattatgtagGTCATAAACGAGACGGTCCGTTTGGCCAACATCGCTCCTGTCATCTTCAGAAAGGCACTTAAAGACATACGGTTCAATG
               tgctaaa  putative branch site (score: 2)
                                         ctcctatt  putative PPT
                                             tattatgta  TA-rich tract