1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaagaactatcattacatgacttctgatttttatagtagttcctttttttttatcaagtatataaaccattttttataagatacggagcagctctgtttgcgtactattctaatattctgcattgttttgtagGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAG
species | Oryza sativa |
transcript | LOC_Os04g47120.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATG GAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGEST: gi|88370519|gb|CI590097.1|CI590097
genomic: AGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGgtaagaacta ... tgttttgtagGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAG
EST: AGAAAACCGCCCTGACTATGTGTTAAATAAGTCTGACTAGTTTGGTTATG GACCCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAEST: gi|58691473|gb|CK080160.1|CK080160
genomic: AGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGgtaagaacta ... tgttttgtagGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCA
EST: AGAAAACCGCCCTGAC-NTGTGTTAAATAAGTATGACTACTTTGGTTATG GAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGEST: gi|88356363|gb|CI652800.1|CI652800
genomic: AGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGgtaagaacta ... tgttttgtagGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAG
EST: AGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATG GAACCAATAGTTCTGTG
genomic: AGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGgtaagaacta ... tgttttgtagGAACCAATAGTTCTGTG
agatacggagcagctctgtttgcgtactattctaatattctgcattgttttgtagGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAG
ttctaat putative branch site (score: 17)
ttgtttt putative PPT
tactattctaatatt TA-rich tract