1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaatgaaatggagctttcgtgtcagtcttttcttccctatgtatttgcctaccattctaaatatgcatttatgacactctttttttctttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGTGGCTACAGG
species | Oryza sativa |
transcript | LOC_Os04g46620.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAACEST: gi|88389824|gb|CI626593.1|CI626593
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAAC
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGTEST: gi|88576618|gb|CI670763.1|CI670763
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGT
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAACAEST: gi|86826131|gb|CI311004.1|CI311004
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACA
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGTEST: gi|88358293|gb|CI606802.1|CI606802
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGT
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTEST: gi|88334889|gb|CI648664.1|CI648664
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCT
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAANAAAATCCATCCGACAEST: gi|88395151|gb|CI609467.1|CI609467
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACA
EST: TGGGACATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCA-TGATCTTGTGAGAAACAAAATCCATCCGACGTCTATTATCAGTEST: gi|88372614|gb|CI610937.1|CI610937
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGT
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTAEST: gi|13807435|gb|AU181953.1|AU181953
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTA
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGTEST: gi|88424401|gb|CI607987.1|CI607987
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGT
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTEST: gi|88301610|gb|CI597303.1|CI597303
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCT
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGTEST: gi|88350316|gb|CI623254.1|CI623254
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGT
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATEST: gi|88396969|gb|CI578118.1|CI578118
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACAT
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGAAGAATTGCTAAAG CGGGGCAATGATCEST: gi|58663765|gb|CK052451.1|CK052451
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATC
EST: TGGGTGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGTEST: gi|88416925|gb|CI573640.1|CI573640
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGT
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAC CGGGGCCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGEST: gi|88426602|gb|CI579431.1|CI579431
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGC-AATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAG
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACAEST: gi|88315088|gb|CI610147.1|CI610147
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACA
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCEST: gi|58682634|gb|CK071321.1|CK071321
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATC
EST: TGGGTGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGTEST: gi|88727997|gb|CI751507.1|CI751507
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGT
EST: TGGGAGATGGAACGACATCTGTCGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAACAAATTC-ATCGGACATTTATTAEST: gi|88354225|gb|CI637791.1|CI637791
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTA
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTEST: gi|58690688|gb|CK079375.1|CK079375
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCT
EST: TGGGTGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGTEST: gi|29682947|gb|CB679222.1|CB679222
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGT
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGTEST: gi|58653426|gb|CK042106.1|CK042106
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGT
EST: TGGGTGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGTEST: gi|88336708|gb|CI643883.1|CI643883
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGT
EST: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAG CGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTA
genomic: TGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaat ... tttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTA
atttgcctaccattctaaatatgcatttatgacactctttttttctttttaccagCGGGGCAATGATCTTGTGAGAAACAAAATCCATCCGACATCTATTATCAGTGGCTACAGG
ttctaaa putative branch site (score: 58)
cactctttttttcttt putative PPT
tctttttttcttttta TA-rich tract