1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagtcttgtaatatgaaacagagggagtaggacaacttctgaagttcatcaacccccttgcacgatggacttaccctgatatggtacgtgctatatgcagCGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACCTATCAAAGGATGTAACTATTGTCAAAAGAATCCCTTATGAGGTGATGATGTCAATG
species | Oryza sativa |
transcript | LOC_Os04g46570.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAGATCACCACTCATTCTGGAAGGATGATAG CGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACCTATCAAAEST: gi|4715473|gb|AU056590.1|AU056590
genomic: TAGATCACCACTCATTCTGGAAGGATGATAGgtaagttgag ... ctatatgcagCGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACCTATCAAA
EST: ACACTTGTTGTACCTGAGTTAGATCACCACTCATTCTGGAAGGATGATAG CGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACCTATCAAAEST: gi|33675275|gb|CF303514.1|CF303514
genomic: ACACTTGTTGTACCTGAGTTAGATCACCACTCATTCTGGAAGGATGATAGgtaagttgag ... ctatatgcagCGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACCTATCAAA
EST: ACACTTGTTGTACCTGAGTTAGATCACCACTCATTCTGGAAGGATGATAG CGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACCTATCAAA
genomic: ACACTTGTTGTACCTGAGTTAGATCACCACTCATTCTGGAAGGATGATAGgtaagttgag ... ctatatgcagCGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACCTATCAAA
tcatcaacccccttgcacgatggacttaccctgatatggtacgtgctatatgcagCGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACCTATCAAAGGATGTAACTATTGTCAAAAGAATCCCTTATGAGGTGATGATGTCAATG
tatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtcttgtaatatgaaacagagggagtaggacaacttctgaagttcatcaacccccttgcacgatggacttaccctgatatggtacgtgctatatgcagCGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACCTATCAAAGGATGTAACTATTGTCAAAAGAATCCCTTATGAGGTGATGATGTCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA