Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatagggaaagctgtaccttaactataggactacacatgtcatacttgtatcatgtatggcatcctttgaactaaagcctatgcatttgcaccctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAAGTCGCGATCGTCCACAAGGAAGCTGAGGAGAAGAGAGCAATGGTCGAGG

Basic information

species Oryza sativa
transcript LOC_Os04g45070.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g45070.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G122937_T01 (Zea mays), 3'ss of exon 4
-tatagggaaagctgtaccttaactataggactacacatgtcatacttgtatcatgtatggcatcctttgaactaaagcctatgca-tttgcaccctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAAGTCGCGATCGTCCACAAGGAAGCTGAGGAGAAGAGAGCAATGGTCGAGG
  | | | | || |  |    |||||     | || |        |   ||  | ||  |  ||||| | | ||| ||| |||    |||   |   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||  | ||||||||||| || |||||| |||| ||||| ||||
ggaaaagaatagatccagtggaactaatatgccaccccccctccccccctaaaaggt--gatatcctcttagctacagcttatatggtttattcatgttcagGAACAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAGGTTGCAATGATACACAAGGAAGCCGAAGAGAAGCGAGCGATGGTGGAGG

upper sequence: LOC_Os04g45070.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G116538_T02 (Zea mays), 3'ss of exon 4
tatagggaaagctgtacct---taactataggactacacatgtcatacttgtatcatgtatggcatcctttgaactaaagcctatgca-tttgcaccctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAAGTCGCGATCGTCCACAAGGAAGCTGAGGAGAAGAGAGCAATGGTCGAGG
 || | | | || | |      ||  |  || |  ||  || |   ||   ||  | ||  |  ||| |   |||||  ||  ||  | |||   |   ||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| || || ||  |||||| |||||| || |||||| |||| ||||| ||||
-atggaggacgccgcaaaaggatagatccagtagaactaatatgccacccctaaaaggt--gatatcatcataactat-gctcatataatttattcatgttcagGAACAACTGGAAAAGAAGAAAGCTGAATATGCTGAGAAGATGAAAAACAAGGTTGCAATGATCCACAGGGAAGCCGAAGAGAAGCGAGCGATGGTGGAGG

upper sequence: LOC_Os04g45070.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA18G46470.1 (Glycine max), 3'ss of exon 4
-tatagggaaagc-tgtaccttaactataggactacacatgtcata-cttgtatcatgtatggcatcctttgaactaaagccta-tgcatttgcaccctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAAGTCGCGATCGTCCACAAGGAAGCTGAGGAGAAGAGAGCAATGGTCGAGG
 ||     ||||| ||| |  | |  ||||      |||  |  || ||||||  |  | ||       || |  ||     || |   ||          ||||| |||||||| || ||||| || |||||||  || || ||||||||||| || ||  | || ||||||||||| ||||||||||| |||||| | || |
ataacttaaaagcatgtgctatgaa-atagtttagaacagattttaacttgtaatacttttgctg---attaatatagcttttaataacttcttgtgtgagcagGAACAACTGGAGAAAAAGAAAGCAGAATATGGTGAAAAAATGAAGAACAAGGTGGCCTTAGTTCACAAGGAAGCAGAGGAGAAGAGGGCAATGATTGAAG

upper sequence: LOC_Os04g45070.1 (Oryza sativa), 3'ss of exon 4
lower sequence: AT3G61260.1 (Arabidopsis thaliana), 3'ss of exon 4
tatagggaaagctgtaccttaactataggactacacatgtcatacttgtatcatgtatggcatcctttgaactaaagcctatgcatttgcacccttt-cagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAAGTCGCGATCGTCCACAAGGAAGCTGAGGAGAAGAGAGCAATGGTCGAGG
             |||   |||   ||| | || | | || | ||   | | ||||     |    |  |     |   | ||  |||   | |  | ||||||||||| || |||||||| || || |||||||||| ||||||||| || || ||     | ||||||||||| || ||||  ||||||||| | || |
-------------gtataataaacttagcaatagagaggtgaaacggttttaatgtgattgagaagtgaagtgttaatttgtgagttttttctcaatgcagGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAGGTTGCAGCGATTCACAAGGAAGCAGAAGAGAGAAGAGCAATGATTGAAG

upper sequence: LOC_Os04g45070.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv15s0046g03180.t01 (Vitis vinifera), 3'ss of exon 4
tatagggaaagctgtaccttaactataggactacacatgtcatacttgtatcatgt-atggcatcctttgaactaaagcctatgcatttgcaccctt-tcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAAGTCGCGATCGTCCACAAGGAAGCTGAGGAGAAGAGAGCAATGGTCGAGG
      | ||  || || || |   |||||  ||| ||   |   |||| |  | | ||   ||  |||  | | ||  |||   | ||  | | |  ||||||  || |||| ||||||||||| |||||||||||||| ||||| |||||||| ||  |  | |||||| |||| || || ||||  |||||| | || |
-gagaagcaaaatgaactttcaaattaggagaaca-atacgaattttgtttggttttatatgatgttttacattgaactctaacaacttcaagcatgatcagGAAGAATTGGAGAAGAAGAAGGCAGAATATGCAGAGAAAATGAAAAACAAAGTAGCATTGATTCACAAGCAAGCAGAAGAAAAGAAGGCAATGATTGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86528410|gb|CI168616.1|CI168616
EST:     GGGAGAACACAAAGAAAGCCAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|38471548|gb|CF955679.1|CF955679
EST:     GGGAGAACACAGAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|38471757|gb|CF955888.1|CF955888
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|14192543|gb|AU184754.1|AU184754
EST:     GGGAGAACCCAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|58585685|gb|CF983993.1|CF983993
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|50878545|gb|AF527706.1|AF527706
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATTCAGA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGA
EST: gi|88968318|gb|CI098560.1|CI098560
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|58687400|gb|CK076087.1|CK076087
EST:     CATAGAAGCTCAACTGAAGAAGA-TGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: CATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|88201457|gb|CI201812.1|CI201812
EST:     AAGCTAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: AAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|29631133|gb|CB636142.1|CB636142
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|89181664|gb|CI113170.1|CI113170
EST:     AGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: AGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|88963099|gb|CI026773.1|CI026773
EST:     TAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: TAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|58611899|gb|CK039611.1|CK039611
EST:     ATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: ATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|87010775|gb|CI312467.1|CI312467
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|88265218|gb|CI368992.1|CI368992
EST:     GCTCAACTGAAGAAGATTGAG                         GAGCAACT-GAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|87026567|gb|CI252521.1|CI252521
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|86535482|gb|CI175688.1|CI175688
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|58694961|gb|CK083648.1|CK083648
EST:     GGGAGAACACAAAGCAAGCTAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGATAAGAAGAAGGCTGGATATGCAGAGCAGATGAAGCACGAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|58693172|gb|CK081859.1|CK081859
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|29684469|gb|CB680744.1|CB680744
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|89167373|gb|CI252904.1|CI252904
EST:     GGGAGAACACAAAGAAAGCCAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|29670320|gb|CB666595.1|CB666595
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|88205439|gb|CI205288.1|CI205288
EST:     ACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: ACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|88202739|gb|CI201094.1|CI201094
EST:     GGGAGAACACAAAGAAAGCCAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|86508439|gb|CI151072.1|CI151072
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|87031278|gb|CI261652.1|CI261652
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|38470437|gb|CF954568.1|CF954568
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|58587509|gb|CF985817.1|CF985817
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAAGTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|88903960|gb|CI006193.1|CI006193
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACCAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|58603482|gb|CK014010.1|CK014010
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|88209446|gb|CI209295.1|CI209295
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|88215200|gb|CI215049.1|CI215049
EST:     AGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: AGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|86479426|gb|CI122059.1|CI122059
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|86478310|gb|CI120943.1|CI120943
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|86528486|gb|CI168692.1|CI168692
EST:     GGAGAACACAAAGAAAGCGAACATAGAAGCTCAAGCTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGAGAACACAAAGAAAGCAAACATAGAAGCTCAA-CTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|89189973|gb|CI013540.1|CI013540
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|86256047|gb|CI007763.1|CI007763
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|29670321|gb|CB666596.1|CB666596
EST:     GGGAGAACCCAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|163929288|gb|EG713089.1|EG713089
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|86433088|gb|CI093431.1|CI093431
EST:     GAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|313084059|gb|HO213842.1|HO213842
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|88231917|gb|CI231766.1|CI231766
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|86252391|gb|CI056128.1|CI056128
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|86598472|gb|CI355089.1|CI355089
EST:     GGGAGAACACAAAGAAAGCAAACATAGATGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|89165064|gb|CI255121.1|CI255121
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|58696071|gb|CK084758.1|CK084758
EST:     GGGAGAACACAAAGAAAGCCAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|88216477|gb|CI216326.1|CI216326
EST:     GGGAGAACACAAAGAAAGCGTACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|88992545|gb|CI035633.1|CI035633
EST:     GGGAGAACACCAAGAAAGCCAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCCACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACCAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|38470061|gb|CF954192.1|CF954192
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|88367239|gb|CI564003.1|CI564003
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|58601478|gb|CK012006.1|CK012006
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGACGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|15858605|gb|BI811417.1|BI811417
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGACGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|88839566|gb|CI005354.1|CI005354
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|163923100|gb|EG712799.1|EG712799
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|86597597|gb|CI274588.1|CI274588
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|89187859|gb|CI009843.1|CI009843
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
EST: gi|58590741|gb|CF989049.1|CF989049
EST:     GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAG                         GAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 57 (upstream exon), 74 (downstream exon)
Score: 78

GGCTTCGAAGAAGCTATCTGCTATTCTTTCCTGGGAGAACACAAAGAAAGCAAACATAGAAGCTCAACTGAAGAAGATTGAGgtatacagct ... accctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAAGTCGCGATCGTCCACAAGGAAGCTGAGGAGAAGAGAGCAATGGTCGAGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtatcatgtatggcatcctttgaactaaagcctatgcatttgcaccctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAAGTCGCGATCGTCCACAAGGAAGCTGAGGAGAAGAGAGCAATGGTCGAGG
                        aactaaa  putative branch site (score: 78)
                                            caccctttc  putative PPT
                        aactaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatagggaaagctgtaccttaactataggactacacatgtcatacttgtatcatgtatggcatcctttgaactaaagcctatgcatttgcaccctttcagGAGCAACTGGAAAAGAAGAAGGCTGAATATGCAGAGAAGATGAAGAACAAAGTCGCGATCGTCCACAAGGAAGCTGAGGAGAAGAGAGCAATGGTCGAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - -ctgtacc
- - - - - - - - - - - - - - - - -cacatgt
- - - - - - - - - - - - - - - - - - - - - - cttgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - atgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgca