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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaggagaactttaaaaaatatgtttgaatttgtagtgtgttggtagatttgtagacaaaaaggcatgagtgcttgtgagtaatattgccttctcttgcagGCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATTCGGTATCTTCCATCGAATCGGCAAATTTTGATGTTCTCTGCAACATTCC

Basic information

species Oryza sativa
transcript LOC_Os04g45040.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58659856|gb|CK048536.1|CK048536
EST:     AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAG                         GCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATT
genomic: AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAGgtatatcatt ... tctcttgcagGCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATT
EST: gi|27554371|gb|CA998271.1|CA998271
EST:     AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAG                         GCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATT
genomic: AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAGgtatatcatt ... tctcttgcagGCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATT
EST: gi|33677782|gb|CF306021.1|CF306021
EST:     AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAG                         GCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATT
genomic: AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAGgtatatcatt ... tctcttgcagGCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATT
EST: gi|58684322|gb|CK073009.1|CK073009
EST:     AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAG                         GCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATT
genomic: AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAGgtatatcatt ... tctcttgcagGCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATT
EST: gi|163919907|gb|EG714909.1|EG714909
EST:     AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAG                         GCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATT
genomic: AGAAAGGTGTCTGCGTCCTGAAGAACTGTTCAATGCTTGTTATGGATGAGgtatatcatt ... tctcttgcagGCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttgtagacaaaaaggcatgagtgcttgtgagtaatattgccttctcttgcagGCAGACAAGCTTCTTTCTCCTGAGTTCCAACCGTCTATTCAGGAATTGATTCGGTATCTTCCATCGAATCGGCAAATTTTGATGTTCTCTGCAACATTCC
                                     tattgccttctctt  CT-rich tract
                                agtaatatt  TA-rich tract