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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgttagcattactattactttcaaacaacacaactaccaaaggaatatagtgtcatttggtatattttgtacaccgcaatcaatgttttgtgttgtctaatttccttcatacaaatttccatgtgcatgaacataatgtcttggaattttccatcttttgacgttaatgctacaccactcttatagGCTCTCGAAAGTCTCTGCTGAATGTATTCCATGATGGGTCTTGCCACCCAGAAATGGCCCTAGTGATTGATGATCGCTTGAAAGTTTGGGATGAGAAAGA

Basic information

species Oryza sativa
transcript LOC_Os04g44710.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g44710.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA13G31510.1 (Glycine max), 3'ss of exon 3
gtaggtgttagcattactattactttcaaacaacacaactaccaaaggaatatagtgtcatttggtatattttgtacaccgcaatcaatgttttgtgttgtctaatttcc--ttcatacaaatttccatgtgcatgaacataatgtcttggaattttccatcttttgacgttaatgctacaccactcttatagGCTCTCGAAAGTCTCTGCTGAATGTATTCCATGATGGGTCTTGCCACCCAGAAATGGCCCTAGTGATTGATGATCGCTTGAAAGTTTGGGATGAGAAAGA
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--------------------------------------------------------------------------------------aatagctcgaattttaaattttcaaattcatagcagtttt--tctgctgcaac----tgttcatttattttttgtgcttct-tgtgtgtttcaatatattataatagGTTTAAAGAAATCATTGTTTAATGTATTCCAAAATGGCTTATGCCATCTGAAGATGGCATTGGTAATTGATGATCGCTTGAAAGTGTGGGATGAGAAAGA

upper sequence: LOC_Os04g44710.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA13G25010.1 (Glycine max), 3'ss of exon 3
gtaggtgttagcattactattactttcaaacaacacaactaccaaaggaatatagtgtcatttggtatattttgtacaccgcaatcaatgttttgtgttgtctaatttccttcatacaaatttccatgtgcatgaacataatgtcttggaattttccatcttttgacgttaatgctacaccactcttatagGCTCTCGAAAGTCTCTGCTGAATGTATTCCATGATGGGTCTTGCCACCCAGAAATGGCCCTAGTGATTGATGATCGCTTGAAAGTTTGGGATGAGAAAGA
||| | |||| || | | ||| ||| || | | | | | || | ||| | | | | | | | | || ||| | ||||| || | ||||| ||||| ||||| || || | ||| | ||||| | || |||||||||||||||||||| |||||||||| ||
-----------------------------------------------------------------------------------------ctttatttttgtaccataccatatgcctgtgtttttgc-tgctgctgtttagtttgcttgtcatacttataatatgatggtgtttcaataata-taatacagGTTTGAAGAAGTCATTGTTCAATGTCTTCCAAGATGGTTCATGTGATCCAAAGATGGCATTGGTAATTGATGATCGCTTGAAAGTGTGGGATGAGAGGGA

upper sequence: LOC_Os04g44710.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA07G31430.1 (Glycine max), 3'ss of exon 3
gtaggtgttagcattactattactttcaaacaacacaactaccaaaggaatatagtgtcatttggtatattttgtacaccgcaatcaatgttttgtgttgtctaatttccttcatacaa-atttccatgtgcatgaacataatgtcttgga-attttccatcttttgacgttaatgctacaccactct--tatagGCTCTCGAAAGTCTCTGCTGAATGTATTCCATGATGGGTCTTGCCACCCAGAAATGGCCCTAGTGATTGATGATCGCTTGAAAGTTTGGGATGAGAAAGA
|| | | | ||| ||||||| || | || || | ||| | | || ||| || | | | | || | | || ||| | ||||| || | ||||| ||||| ||||| | ||||| ||| | ||||| | || |||||||||||||||||||| ||||||||||| ||
----------------------------------------------------------------------------------------------atgctttattattgtac-catacaatatgcctgtgcttttgctggttctgtttaatttacttgtcatacttataatatggtatttcaataatacaatacagGTTTGAAGAAGTCATTGTTCAATGTCTTCCAAGATGGTTTATGCCATCCAAAGATGGCATTGGTAATTGATGATCGCTTGAAAGTGTGGGATGAGAAGGA

upper sequence: LOC_Os04g44710.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA15G07800.1 (Glycine max), 3'ss of exon 3
gtaggtgttagcattactattactttcaaacaacacaactaccaaaggaatatagtgtcatttggtatattttgtacaccgcaatcaatgttttgtgttgtctaatttccttcatacaaatttccatgtgcatga-acataatgtcttggaattttccatct---tttgacgttaatgctacaccac-tcttatagGCTCTCGAAAGTCTCTGCTGAATGTATTCCATGATGGGTCTTGCCACCCAGAAATGGCCCTAGTGATTGATGATCGCTTGAAAGTTTGGGATGAGAAAGA
||| ||| ||||| | | | ||| | | | | |||| || | | ||| || || | | | | | ||| | || | | | | |||||| | | ||| | | | | || || | | ||| | ||| ||| ||| | | | | ||||| | || || || | ||||||||||| |||| | ||||| | | ||||| | || |||||||||||| ||||||| ||||||||||||||
gtaagtg---gcatttttttaaaattctattatccttgttttcaaatgagaagctttacatgtgtaattgagtagataaagggagcaaataaaaaggatgacaatagcttgtattttaaattttaaaattcataccagtttttctgctgcaactgttcatttattttttgtgtttatgtgtttcaatatataatagGTTTAAAGAAATCGTTGTTTAATGTATTCCAAAATGGCTTATGCCATCTGAAGATGGCATTGGTAATTGATGATCGCCTGAAAGTGTGGGATGAGAAAGA

upper sequence: LOC_Os04g44710.2 (Oryza sativa), 3'ss of exon 4
lower sequence: AT4G21670.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaggtgttagcattactattactttcaaacaacacaactaccaaaggaatatagtgtcatttggtatattttgtacaccgcaatcaatgttttgtgttgtctaatttccttcatacaaatttccatgtgcatgaacataat-gtcttggaattttccatcttttgacgttaatgctacaccactcttatagGCTCTCGAAAGTCTCTGCTGAATGTATTCCATGATGGGTCTTGCCACCCAGAAATGGCCCTAGTGATTGATGATCGCTTGAAAGTTTGGGATGAGAAAGA
| | ||| | | || | ||| | | | || | | || || | | | | | | ||||| | ||| | | |||||| ||| | ||||| || | ||||| | ||||| ||| | ||||| | || ||||||||||| |||||||||||||||||||| ||
--------------------------------------------------------------------------------------------------------gtatactttttggtatcttatacctgcttatatttcatcatggtaaaacttcttac------aagcttgtaattaaccacc---acagGTTTTAAAAAGTCACTGTTCAATGTGTTTCTCGATGGAACCTGCCATCCAAAGATGGCATTGGTAATTGATGATCGATTGAAAGTTTGGGATGAGAAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataatgtcttggaattttccatcttttgacgttaatgctacaccactcttatagGCTCTCGAAAGTCTCTGCTGAATGTATTCCATGATGGGTCTTGCCACCCAGAAATGGCCCTAGTGATTGATGATCGCTTGAAAGTTTGGGATGAGAAAGA
                                           ccactctt  CT-rich tract
 aatttt  TA-rich tract