1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aataagatctttcatagtttttcaaactggtccagtgtctgattttctgtattttcccttgctatatataacttatgactgtttttttgtgaatatccagCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCGGAGTTACAGA
species | Oryza sativa |
transcript | LOC_Os04g44560.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGTTGTTCGGAAATAATCCTGTACTTATCAGAG CTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCNAAGAAATTTTCEST: gi|58601412|gb|CK011940.1|CK011940
genomic: CGTTGTTCGGAAA-AATCCTGTACTTATCAGAGgtaagctgtt ... gaatatccagCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTC
EST: GTAAGCTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAG CTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCEST: gi|2798129|gb|AA751423.1|AA751423
genomic: GTAAGCTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAGgtaagctgtt ... gaatatccagCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTC
EST: TAA-CGTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAG CTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTEST: gi|29686490|gb|CB682765.1|CB682765
genomic: TAAGC-TTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAGgtaagctgtt ... gaatatccagCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGT
EST: GTAAGCTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAG CTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCEST: gi|86497551|gb|CI140184.1|CI140184
genomic: GTAAGCTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAGgtaagctgtt ... gaatatccagCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTC
EST: GTAAGCTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAG CTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCEST: gi|29686489|gb|CB682764.1|CB682764
genomic: GTAAGCTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAGgtaagctgtt ... gaatatccagCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTC
EST: GTAAGCTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAG CTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCEST: gi|58600228|gb|CK010756.1|CK010756
genomic: GTAAGCTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAGgtaagctgtt ... gaatatccagCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTC
EST: TCGGAAAAATCCTGTACTTATCAGAG CTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCEST: gi|44675716|gb|CR289150.1|CR289150
genomic: TCGGAAAAATCCTGTACTTATCAGAGgtaagctgtt ... gaatatccagCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTC
EST: GTAAGCTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAG CTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTC
genomic: GTAAGCTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAGgtaagctgtt ... gaatatccagCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTC
tctgtattttcccttgctatatataacttatgactgtttttttgtgaatatccagCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCGGAGTTACAGA
atataac putative branch site (score: 41)
tatatataacttatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataagatctttcatagtttttcaaactggtccagtgtctgattttctgtattttcccttgctatatataacttatgactgtttttttgtgaatatccagCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCGGAGTTACAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - ctttcat
- - - - - - - - - - - - - ctggtcc
- - - - - - - - - - - - - - - - - gtgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgactg