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gtatatacaagtaatttttgtctaagtgcttgactagttttccataagctaattctttgaaactgttaactttctttttatatatgtagGAAGCTAACAAACCTCCAGATAGTTGGTTTGATCTCAAAGTTAACACACATGTCTACGTTACTGGTTTGCCTGATGATGTCACAGCTGAGGAG
species | Oryza sativa |
transcript | LOC_Os04g41910.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAGAGCAGATAAGAAGCGGAAGTCTTCTGAGAAGCCAGCCGATAAAAAG GAAGCTAACAAACCTCCAGATAGTTGGTTTGATCTCAAAGTTAACACACATEST: gi|29636733|gb|CB641742.1|CB641742
genomic: AGAGAGCAGATAAGAAGCGGAAGTCTTCTGAGAAGCCAGCCGATAAAAAGgtatatacaa ... atatatgtagGAAGCTAACAAACCTCCAGATAGTTGGTTTGATCTCAAAGTTAACACACAT
EST: AGAGAGCAGATAAGAAGCGGAAGTCTTCTGAGAAGCCAGCCGATAAAAAG GAAGCTAACAAACCTCCAGATAGTTGGTTTGATCTCAAAGTTAACACACATEST: gi|89190588|gb|CI392441.1|CI392441
genomic: AGAGAGCAGATAAGAAGCGGAAGTCTTCTGAGAAGCCAGCCGATAAAAAGgtatatacaa ... atatatgtagGAAGCTAACAAACCTCCAGATAGTTGGTTTGATCTCAAAGTTAACACACAT
EST: AGAGAGCAGATAAGAAGCGGAAGTCTTCTGAGAAGCCAGCCGATAAAAAG GAAGCTAACAAACCTCCAGATAGTTGGTTTGATCTCAAAGTTAACACACATEST: gi|88502487|gb|CI429993.1|CI429993
genomic: AGAGAGCAGATAAGAAGCGGAAGTCTTCTGAGAAGCCAGCCGATAAAAAGgtatatacaa ... atatatgtagGAAGCTAACAAACCTCCAGATAGTTGGTTTGATCTCAAAGTTAACACACAT
EST: AGAGAGCAGATAAGAAGCGGAAGTCTTCTGAGAAGCCAGCCGATAAAAAG GAAGCTAACAAACCTCCAGATAGTTGGTTTGATCTCAAAGTTAACACACAT
genomic: AGAGAGCAGATAAGAAGCGGAAGTCTTCTGAGAAGCCAGCCGATAAAAAGgtatatacaa ... atatatgtagGAAGCTAACAAACCTCCAGATAGTTGGTTTGATCTCAAAGTTAACACACAT
tagttttccataagctaattctttgaaactgttaactttctttttatatatgtagGAAGCTAACAAACCTCCAGATAGTTGGTTTGATCTCAAAGTTAACACACATGTCTACGTTACTGGTTTGCCTGATGATGTCACAGCTGAGGAG
tgttaac putative branch site (score: 2)
ctttctttttatat CT-rich tract
ttaactttctttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatacaagtaatttttgtctaagtgcttgactagttttccataagctaattctttgaaactgttaactttctttttatatatgtagGAAGCTAACAAACCTCCAGATAGTTGGTTTGATCTCAAAGTTAACACACATGTCTACGTTACTGGTTTGCCTGATGATGTCACAGCTGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG