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gtaagtgtctcctggataatgcatacctaatcgtgttggtctgatgagtgtctatatgccattgtgatgaaatttctgttcttttatcttgtcagGTACAACCGATTAAGAGATAAGTTCCCAGCTGCATCTTTTTCTGGTCGTCCAATTCTGTCTGAAGCAGGTTTTGATCTGTTAAATAATCTTCTAACATAC
species | Oryza sativa |
transcript | LOC_Os04g41100.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCTGGCTATGCCAAATTGCCGGGTGTAAAAGTCAATTTTGTCAAACAACC GTACAACCGATTAAGAGATAAGTTCCCAGCTGCATCTTTTTCTGGTCGTCCEST: gi|44675738|gb|CR289172.1|CR289172
genomic: CCTGGCTATGCCAAATTGCCGGGTGTAAAAGTCAATTTTGTCAAACAACCgtaagtgtct ... atcttgtcagGTACAACCGATTAAGAGATAAGTTCCCAGCTGCATCTTTTTCTGGTCGTCC
EST: GCCGGGTGTAAAAGTCAATTTTGTCAAACAACC GTACAACCGATTAAGAGATAAGTTCCCAGCTGCATCTTTTTCTGGTCGTCCEST: gi|86910572|gb|CI294713.1|CI294713
genomic: GCCGGGTGTAAAAGTCAATTTTGTCAAACAACCgtaagtgtct ... atcttgtcagGTACAACCGATTAAGAGATAAGTTCCCAGCTGCATCTTTTTCTGGTCGTCC
EST: CCTGGCTATGCCAAATTGCCGGGTGTAAAAGTCAATTTTGTCAAACAACC GTACAACCGATTAAGAGATAAGTTCCCAGCTGCATCTTTTTCTGGTCGTCCEST: gi|58687429|gb|CK076116.1|CK076116
genomic: CCTGGCTATGCCAAATTGCCGGGTGTAAAAGTCAATTTTGTCAAACAACCgtaagtgtct ... atcttgtcagGTACAACCGATTAAGAGATAAGTTCCCAGCTGCATCTTTTTCTGGTCGTCC
EST: CCTGGCTATGCCAAATTGCCGGGTGTAAAAGTCAATTTTGTCAAACAACC GTACAACCGATTAAGAGATAAGTTCCCAGCTGCATCTTTTTCTGGTCGTCCEST: gi|29679248|gb|CB675523.1|CB675523
genomic: CCTGGCTATGCCAAATTGCCGGGTGTAAAAGTCAATTTTGTCAAACAACCgtaagtgtct ... atcttgtcagGTACAACCGATTAAGAGATAAGTTCCCAGCTGCATCTTTTTCTGGTCGTCC
EST: CCTGGCTATGCCAAATTGCCGGGTGTAAAAGTCAATTTTGTCAAACAACC GTACAACCGATTAAGAGATAAGTTCCCAGCTGCATCTTTTTCTGGTCGTCCEST: gi|29631235|gb|CB636244.1|CB636244
genomic: CCTGGCTATGCCAAATTGCCGGGTGTAAAAGTCAATTTTGTCAAACAACCgtaagtgtct ... atcttgtcagGTACAACCGATTAAGAGATAAGTTCCCAGCTGCATCTTTTTCTGGTCGTCC
EST: TGCCAAATTGCCGGGTGTAAAAGTCAATTTTGTCAAACAACC GTACAACCGATTAAGAGATAAGTTCCCAGCTGCATCTTTTTCTGGTCGTCC
genomic: TGCCAAATTGCCGGGTGTAAAAGTCAATTTTGTCAAACAACCgtaagtgtct ... atcttgtcagGTACAACCGATTAAGAGATAAGTTCCCAGCTGCATCTTTTTCTGGTCGTCC
ctgatgagtgtctatatgccattgtgatgaaatttctgttcttttatcttgtcagGTACAACCGATTAAGAGATAAGTTCCCAGCTGCATCTTTTTCTGGTCGTCCAATTCTGTCTGAAGCAGGTTTTGATCTGTTAAATAATCTTCTAACATAC
gtctgat putative branch site (score: 4)
tttctgttcttttatc putative PPT
atgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtctcctggataatgcatacctaatcgtgttggtctgatgagtgtctatatgccattgtgatgaaatttctgttcttttatcttgtcagGTACAACCGATTAAGAGATAAGTTCCCAGCTGCATCTTTTTCTGGTCGTCCAATTCTGTCTGAAGCAGGTTTTGATCTGTTAAATAATCTTCTAACATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC