1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcagtaatcttttcccttttgacaatttggctactcctctgatgcattacgaaattatgcatgctgaatttgtttccgtttgttatgtaatcagGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG
species | Oryza sativa |
transcript | LOC_Os04g39270.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAG GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGEST: gi|23513963|gb|BU673400.1|BU673400
genomic: AAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGgtcagtaatc ... atgtaatcagGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG
EST: AAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAG GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGEST: gi|29616384|gb|CB621396.1|CB621396
genomic: AAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGgtcagtaatc ... atgtaatcagGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG
EST: AAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAG GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGEST: gi|88372744|gb|CI612672.1|CI612672
genomic: AAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGgtcagtaatc ... atgtaatcagGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG
EST: AAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAG GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGEST: gi|30226600|gb|CB964492.1|CB964492
genomic: AAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGgtcagtaatc ... atgtaatcagGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG
EST: AAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAG GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGEST: gi|14981037|gb|BI305728.1|BI305728
genomic: AAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGgtcagtaatc ... atgtaatcagGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG
EST: AAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAG GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGEST: gi|29615582|gb|CB620594.1|CB620594
genomic: AAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGgtcagtaatc ... atgtaatcagGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG
EST: AAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAG GGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG
genomic: AAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGgtcagtaatc ... atgtaatcagGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG
tgatgcattacgaaattatgcatgctgaatttgtttccgtttgttatgtaatcagGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG
ctctgat putative branch site (score: 24)
aatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtaatcttttcccttttgacaatttggctactcctctgatgcattacgaaattatgcatgctgaatttgtttccgtttgttatgtaatcagGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA