1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agttagtttatgttgtacatgctgttgattgttgaaaggttcatagaaaattgtccctgattgacacctcttacttgacccttctttcttgtccatacagATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCTATCAAGATCAATTGGTGATCAGGATGTAGGTGAATTTATCATTCCCGTGCCTTATGTGAAGC
species | Oryza sativa |
transcript | LOC_Os04g37660.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGAATGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAG ATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCTATCAAGATCAATTEST: gi|29619327|gb|CB624339.1|CB624339
genomic: CAGAATGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAGgtttttgctc ... gtccatacagATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCTATCAAGATCAATT
EST: CCTAAAGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAG ATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCTATCAAGATCAATTEST: gi|40490361|gb|BX899888.1|BX899888
genomic: CAGAATGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAGgtttttgctc ... gtccatacagATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCTATCAAGATCAATT
EST: CAGAATGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAG ATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCCATCAAGATCAATTEST: gi|58673154|gb|CK061840.1|CK061840
genomic: CAGAATGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAGgtttttgctc ... gtccatacagATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCTATCAAGATCAATT
EST: CAGAATGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAG ATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGEST: gi|58605846|gb|CK033879.1|CK033879
genomic: CAGAATGCGGAGGTGAAGTTGGAAGGCTAAATGTTGTCGGCGGAGCTGAGgtttttgctc ... gtccatacagATTGGGCCACTTAGATGTTGGCCTGGTGGCTTG
EST: GGCTAAATGTTGTCGGCGGAGCTGAG ATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCTATCAAGATCAATT
genomic: GGCTAAATGTTGTCGGCGGAGCTGAGgtttttgctc ... gtccatacagATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCTATCAAGATCAATT
gaaaattgtccctgattgacacctcttacttgacccttctttcttgtccatacagATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCTATCAAGATCAATTGGTGATCAGGATGTAGGTGAATTTATCATTCCCGTGCCTTATGTGAAGC
cctcttacttgaccct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttagtttatgttgtacatgctgttgattgttgaaaggttcatagaaaattgtccctgattgacacctcttacttgacccttctttcttgtccatacagATTGGGCCACTTAGATGTTGGCCTGGTGGCTTGTGCCTATCAAGATCAATTGGTGATCAGGATGTAGGTGAATTTATCATTCCCGTGCCTTATGTGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - tatgttg
- - - - - - - -tacatgc
- - - - - - - - - - - tgttgat
- - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - atagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg