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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctcctcgtcccagcagccggcgccggcggcggcggtgccgcgcgccatgcacgttgctgcgtctgcgtgtgactgatccgtgacggaaacgtgtgcagGTTCTTGGACAAGGCGTGCATCAGGGCGGCGGAGCAGGGGCCGAACACGAAGCCGGAGAGCCCGTGGCGGCTGTGCACGGCGGCCGAGGTGCGGCAGGCC

Basic information

species Oryza sativa
transcript LOC_Os04g36040.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g36040.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G112039_T01 (Zea mays), 3'ss of exon 4
gtgagctcctcgtcccagcagccggcgccggcggcggcggtgccgcgcgccatgcacgttgctgcgtctg-cgtgtgactgatccgtgacggaaacgtgtgcagGTTCTTGGACAAGGCGTGCATCAGGGCGGCGGAGCAGGGGCCGAACACGAAGCC--GGAGAGCCCGTGGCGGCTGTGCACGGCGGCCGAGGTGCGGCAGGCC
|| |||    |||    |||||   |     ||||  |  ||  ||  | || |||| ||||  | |||| |  ||||   |    |||||  |   | || |||||| |||||||||| ||| ||  ||| |||  |||||||||||||||||||||  |   ||| |||||||||||||||||| ||||||||||| |||||  
gtcagcatagcgttgatgcagcgaacag-aacggccacc-tgttgc-tgtca-gcac-ttgcgacctctgacaggtgatcaac---tgacg--agtttttgaagGTTCCTGGACAAGGCATGCGTCCCGGCAGCGCCGCAGGGGCCGAACACGAAGCCCGGAGAAGCGCGTGGCGGCTGTGCACGGTGGCCGAGGTGCAGCAGG--


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccatgcacgttgctgcgtctgcgtgtgactgatccgtgacggaaacgtgtgcagGTTCTTGGACAAGGCGTGCATCAGGGCGGCGGAGCAGGGGCCGAACACGAAGCCGGAGAGCCCGTGGCGGCTGTGCACGGCGGCCGAGGTGCGGCAGGCC
                           gactgat  putative branch site (score: 3)