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gttagtttacacatatctattttggttggtttcgtatgcgatgttttgctcaaatatttgaattttacatgtgaagAGGACTGGAATGGAGGCTAACTACCAGATGGTGCAGTCGCTATATGATTCTTCTTGGAGGAAAATGTGGATGCTGAGACCAAGAATCCAATTTGACG
species | Oryza sativa |
transcript | LOC_Os04g35190.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGTACGCAATCCGACTTTGTGGCGGAATGCTTGCCTCAAAACTTGGCAG AGGACTGGAATGGAGGCTAACTACCAGATGGTGCAGTCGCTATATGATTCTEST: gi|88385826|gb|CI568494.1|CI568494
genomic: CTGTACGCAATCCGACTTTGTGGCGGAATGCTTGCCTCAAAACTTGGCAGgttagtttac ... acatgtgaagAGGACTGGAATGGAGGCTAACTACCAGATGGTGCAGTCGCTATATGATTCT
EST: CTGTACGCAATCCGACTTTGTGGCGGAATGCTTGCCTCAAAACTTGGCAG AGGACTGGAATGGAGGCTAACTACCAGATGGTGEST: gi|218488546|gb|FG955819.1|FG955819
genomic: CTGTACGCAATCCGACTTTGTGGCGGAATGCTTGCCTCAAAACTTGGCAGgttagtttac ... acatgtgaagAGGACTGGAATGGAGGCTAACTACCAGATGGTG
EST: CAAAACTTGGCAG AGGACTGGAATGGAGGCTAACTACCAGATGGTGCAGTCGCTATATGATTCTEST: gi|58674542|gb|CK063229.1|CK063229
genomic: CAAAACTTGGCAGgttagtttac ... acatgtgaagAGGACTGGAATGGAGGCTAACTACCAGATGGTGCAGTCGCTATATGATTCT
EST: CTGTACGCAATCCGACTTTGTGGCGGAATGCTTGCCTCAAAACTTGGCAG AGGACTGGAATGGAGGCTAACTACCAGATGGTGCAGTCGCTATATGATTCTEST: gi|29655901|gb|CB652176.1|CB652176
genomic: CTGTACGCAATCCGACTTTGTGGCGGAATGCTTGCCTCAAAACTTGGCAGgttagtttac ... acatgtgaagAGGACTGGAATGGAGGCTAACTACCAGATGGTGCAGTCGCTATATGATTCT
EST: CTGTACGCAATCCGACTTTGTGGCGGAATGCTTGCCTCAAAACTTGGCAG AGGACTGGAATGGAGGCTAACTACCAGATGGTGCAGTCGCTATATGATTCTEST: gi|88395679|gb|CI590694.1|CI590694
genomic: CTGTACGCAATCCGACTTTGTGGCGGAATGCTTGCCTCAAAACTTGGCAGgttagtttac ... acatgtgaagAGGACTGGAATGGAGGCTAACTACCAGATGGTGCAGTCGCTATATGATTCT
EST: CTGTACGCAATCCGACTTTGTGGCGGAATGCTTGCCTCAAAACTTGGCAG AGGACTGGAATGGAGGCTAACT
genomic: CTGTACGCAATCCGACTTTGTGGCGGAATGCTTGCCTCAAAACTTGGCAGgttagtttac ... acatgtgaagAGGACTGGAATGGAGGCTAACT
ttggttggtttcgtatgcgatgttttgctcaaatatttgaattttacatgtgaagAGGACTGGAATGGAGGCTAACTACCAGATGGTGCAGTCGCTATATGATTCTTCTTGGAGGAAAATGTGGATGCTGAGACCAAGAATCCAATTTGACG
tcaaatatttgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttacacatatctattttggttggtttcgtatgcgatgttttgctcaaatatttgaattttacatgtgaagAGGACTGGAATGGAGGCTAACTACCAGATGGTGCAGTCGCTATATGATTCTTCTTGGAGGAAAATGTGGATGCTGAGACCAAGAATCCAATTTGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG