1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccattgtgcatgagtacaagactagttacactcgttagctattcaatttggtgtggaatcactatttgtatttcataatacatgaatctttgatctgcagGATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACCTGGTAGCTTGCCATCTTTTCAGGAGATCAAGGATACTCTAGGGTTTAACCGATATTACA
species | Oryza sativa |
transcript | LOC_Os04g31700.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCCCGGATTGGGGTATCAATGCTCGCAATGGAG GATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACCTTGGTAGCTTEST: gi|38479644|gb|CF963735.1|CF963735
genomic: GTCCCTGATTGGGGTATCAATGCTCGCAATGGAGgtttgttcat ... tgatctgcagGATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACC-TGGTAGCTT
EST: TCGTAGTCTACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAG GATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACCTGGTAGCTTGEST: gi|29679222|gb|CB675497.1|CB675497
genomic: TCGTAGTCTACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAGgtttgttcat ... tgatctgcagGATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACCTGGTAGCTTG
EST: TCGTAGTCTACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAG GATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACCTGGTAGCTTGEST: gi|29686536|gb|CB682811.1|CB682811
genomic: TCGTAGTCTACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAGgtttgttcat ... tgatctgcagGATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACCTGGTAGCTTG
EST: TCGTAGTCTACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAG GATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACCTGGTAGCTTGEST: gi|86594864|gb|CI258118.1|CI258118
genomic: TCGTAGTCTACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAGgtttgttcat ... tgatctgcagGATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACCTGGTAGCTTG
EST: TACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAG GATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACCTGGTAGCTTGEST: gi|58667415|gb|CK056101.1|CK056101
genomic: TACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAGgtttgttcat ... tgatctgcagGATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACCTGGTAGCTTG
EST: TCGTAGTCTACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAG GCATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCEST: gi|58598367|gb|CK008895.1|CK008895
genomic: TCGTAGTCTACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAGgtttgttcat ... tgatctgcagG-ATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCC
EST: TCGTAGTCTACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAG GATGCTCTGATTGCGATAAAAAGTACTGGTEST: gi|58678066|gb|CK066753.1|CK066753
genomic: TCGTAGTCTACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAGgtttgttcat ... tgatctgcagGATGCTCTGATTGCGATAAAAAGTACTGGT
EST: TCGTAGTCTACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAG GATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACCTGGTAGCTTG
genomic: TCGTAGTCTACCCATTGTCCCTGATTGGGGTATCAATGCTCGCAATGGAGgtttgttcat ... tgatctgcagGATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACCTGGTAGCTTG
atttggtgtggaatcactatttgtatttcataatacatgaatctttgatctgcagGATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACCTGGTAGCTTGCCATCTTTTCAGGAGATCAAGGATACTCTAGGGTTTAACCGATATTACA
ctttgat putative branch site (score: 81)
tcttt CT-rich tract
tatttgtatttcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccattgtgcatgagtacaagactagttacactcgttagctattcaatttggtgtggaatcactatttgtatttcataatacatgaatctttgatctgcagGATGCTCTGATTGCGATAAAAAGTACTGGTGCACCCCGACCTGGTAGCTTGCCATCTTTTCAGGAGATCAAGGATACTCTAGGGTTTAACCGATATTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - tgcatga
- - - - - - - - - - - - - - - - - - - - - - - tttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atacatg