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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctagctaatttgtttcatttatgttgttaataaacgttgtatacaacattatcgttcagctcttgttgcaggaacaatagagcctttaaacataattccttttctgcttgaatacagGTGTGCAGGATATTACAGTGATGCTGATGCTCCCAGTAGAAGAATCGCCAAACCTCTGGTGTTCTGTAGAACTGAAAGTGATAACCCTATCGAGAATGGC

Basic information

species Oryza sativa
transcript LOC_Os04g04950.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g04950.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv00s0225g00090.t01 (Vitis vinifera), 3'ss of exon 4
gtaagctagctaatttgtttcatttatgttgttaataaacgttgtatacaacattatcgttcagctcttgttgcaggaacaatagagcctttaaacat-aattccttttctgcttgaatacagGTGTGCAGGATATTACAGTGATGCTGATGCTCCCAGTAGAAGAATCGCCAAACCTCTGGTGTTCTGTAGAACTGAAAGTGATAACCCTATCGAGAATGGC
    | ||| ||   |||   |||  | |       | |   ||     || |     | |||     ||| |||    |       | |||| ||||   |   | | || |||   ||||||||||  |||||| ||||||||||||||||||| ||| | ||| | || ||||| ||  | || ||| |||| || ||||||   || || || ||||| 
----gttagttaccctgtcagattctt-tcacatgcatatcctgggagaaaaa-----gctcaatatatgtggcaaactc-------cttttacacattggtgtatgtgcttcttt--tacagGTGTGTTGGATATCACAGTGATGCTGATGCTCCTAGTCGTAGACTTGCGAAACCACTTATCTTTTGTCGAACCGAGAGTGATTGTCCAATGGAAAATGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttgcaggaacaatagagcctttaaacataattccttttctgcttgaatacagGTGTGCAGGATATTACAGTGATGCTGATGCTCCCAGTAGAAGAATCGCCAAACCTCTGGTGTTCTGTAGAACTGAAAGTGATAACCCTATCGAGAATGGC
                                 ttccttttctgctt  CT-rich tract
                      tttaaacataatt  TA-rich tract