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...caaaggatggaatttcatatttttgccttataattttgaatttggttcacttagtaattcattccatagactaagttcttgtttggatttccaactatagGAACACTTCCTCCAAAGTGTATCCAGCAATGTATATTGAGAATGTGACTGAACTTGCCTTTGATGATATCACACCTGAAGATTTTGATTTTCCATTTATA
species | Oryza sativa |
transcript | LOC_Os03g64400.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGACGAGAATACGCTCGATGGTTGGTGGTCGCAAGCAATTGTCTATCCAG GAACACTTCCTCCAAAGTGTATCCAGCAATGTATATTGAGAATGTGACTGAEST: gi|58669049|gb|CK057735.1|CK057735
genomic: CGACGAGAATACGCTCGATGGTTGGTGGTCGCAAGCAATTGTCTATCCAGgtgcttactt ... ccaactatagGAACACTTCCTCCAAAGTGTATCCAGCAATGTATATTGAGAATGTGACTGA
EST: AAGCAATTGTCTATCCAG GAACACTTCCTCCAAAGTGTATCCAGCAATGTATATTGAGAATGTGACTGAEST: gi|58669849|gb|CK058535.1|CK058535
genomic: AAGCAATTGTCTATCCAGgtgcttactt ... ccaactatagGAACACTTCCTCCAAAGTGTATCCAGCAATGTATATTGAGAATGTGACTGA
EST: CGACGAGAATACGCTCGATGGTTGGTGGTCGCAAGCAATTGTCTATCCAG GAACACTTCCTCCAAAGTGTATCCAGCAATGTATATTGAGAATGTGACTGAEST: gi|58611882|gb|CK039594.1|CK039594
genomic: CGACGAGAATACGCTCGATGGTTGGTGGTCGCAAGCAATTGTCTATCCAGgtgcttactt ... ccaactatagGAACACTTCCTCCAAAGTGTATCCAGCAATGTATATTGAGAATGTGACTGA
EST: CGACGAGAATACGCTCGATGGTTGGTGGTCGCAAGCAATTGTCTATCCAG GAACACTTCCTCCAAAGTGTATCCAGCAATGTATATTGAGAATGTGACTGA
genomic: CGACGAGAATACGCTCGATGGTTGGTGGTCGCAAGCAATTGTCTATCCAGgtgcttactt ... ccaactatagGAACACTTCCTCCAAAGTGTATCCAGCAATGTATATTGAGAATGTGACTGA
ttcacttagtaattcattccatagactaagttcttgtttggatttccaactatagGAACACTTCCTCCAAAGTGTATCCAGCAATGTATATTGAGAATGTGACTGAACTTGCCTTTGATGATATCACACCTGAAGATTTTGATTTTCCATTTATA
tttcc CT-rich tract
ttagtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaggatggaatttcatatttttgccttataattttgaatttggttcacttagtaattcattccatagactaagttcttgtttggatttccaactatagGAACACTTCCTCCAAAGTGTATCCAGCAATGTATATTGAGAATGTGACTGAACTTGCCTTTGATGATATCACACCTGAAGATTTTGATTTTCCATTTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA