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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattacttcaaatatgtactctttttctctattttatgctctacttatctcttttagcatgtatcttatacacagTTCCGAGCATTGTCCGATCAATTTTACCGCACCACTGAACACCACAGATTTGTTCGGCAACAAATAGTGAAACAG

Basic information

species Oryza sativa
transcript LOC_Os03g64219.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g64219.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G035150_T02 (Zea mays), 3'ss of exon 5
gtattacttcaaatatgtactctttttctctattttatg---------ctctacttatctcttt-tagcatgta-tcttatacacagTTCCGAGCATTGTCCGATCAATTTTACCGCACCACTGAACACCACAGATTTGTTCGGCAACAAATAGTGAAACAG
|| ||   | ||  ||  |   ||||| || |||||            |||     |||| ||| ||   |||  |||  || |||||| |||||  |||| |||||||||||||| ||  ||||||| ||||||||||| ||||| ||| | ||||| |||
gt-ttgtgtaaaggatccatcatttttttccattttgcctgaagccatctcacagcatctatttgtattctgtggtctcttaaacagTTTCGAGCGCTGTCAGATCAATTTTACCGAACTCCTGAACATCACAGATTTGTCCGGCAGCAAGTGGTGAAGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29671297|gb|CB667572.1|CB667572
EST:     AGCTGTATGATCTTGCTGAGCTCAAGGTTGAAGGGGATGGCAATTGTCAG                         TTCCGAGCATTGTCCGATCAATTTTACCGCACCACTGAACACCACAGATTT
genomic: AGCTGTATGATCTTGCTGAGCTCAAGGTTGAAGGGGATGGCAATTGTCAGgtattacttc ... ttatacacagTTCCGAGCATTGTCCGATCAATTTTACCGCACCACTGAACACCACAGATTT
EST: gi|87019141|gb|CI297342.1|CI297342
EST:     AGCTGTATGATCTTGCTGAGCTCAAGGTTGAAGGGGATGGCAATTGTCAG                         TTCCGAGCATTGTCCGATCAATTTTACCGCACCACTGAACACCACAGATTT
genomic: AGCTGTATGATCTTGCTGAGCTCAAGGTTGAAGGGGATGGCAATTGTCAGgtattacttc ... ttatacacagTTCCGAGCATTGTCCGATCAATTTTACCGCACCACTGAACACCACAGATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttctctattttatgctctacttatctcttttagcatgtatcttatacacagTTCCGAGCATTGTCCGATCAATTTTACCGCACCACTGAACACCACAGATTTGTTCGGCAACAAATAGTGAAACAG
       tctattttat  TA-rich tract