1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatcacacagatgaaatttcactgaaattgttcaaagtttattcaactttatatcagagatgagaaacagctgcgtgaattgttctcttttaaattgcagGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTG
species | Oryza sativa |
transcript | LOC_Os03g63520.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATATGAGCTTCTTGGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGG GTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGEST: gi|117223453|gb|CT848631.1|CT848631
genomic: ATATGAGCTTCTTGGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGgtaagtattt ... taaattgcagGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTG
EST: ATATGAGCTTCTTGGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGG GTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGEST: gi|58695719|gb|CK084406.1|CK084406
genomic: ATATGAGCTTCTTGGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGgtaagtattt ... taaattgcagGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTG
EST: ATATGAGCTTCTTGGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGG GTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTG
genomic: ATATGAGCTTCTTGGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGgtaagtattt ... taaattgcagGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTG
actttatatcagagatgagaaacagctgcgtgaattgttctcttttaaattgcagGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTG
ttgttctctttt CT-rich tract
ttctcttttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcacacagatgaaatttcactgaaattgttcaaagtttattcaactttatatcagagatgagaaacagctgcgtgaattgttctcttttaaattgcagGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTG
- - acacaga
- - - - - - - - -ttcactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagctgc