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...cagcgtttacatgaagtttcagtgcgagcagttattggtatatgatggtggtccaggttttagcttgacgctgtctcaactaaattttgcttgattgcagTATGATGCATTTGATATTGGCTTTATAACTACTGATGATTTCACAAATGCGGACATTCTTGAAGCGACATATCCTGCTGTTGCAAAGAGGTTACAGGGTG
species | Oryza sativa |
transcript | LOC_Os03g63330.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAGAATATTTGCTGCATATTTGAATAAACTTGGGAAAAAGGCTCGGCAG TATGATGCATTTGATATTGGCTTTATAACTACTGATGATTTCACAAATGCGEST: gi|29614036|gb|CB619049.1|CB619049
genomic: CAAGAATATTTGCTGCATATTTGAATAAACTTGGGAAAAAGGCTCGGCAGgtacatgctt ... ttgattgcagTATGATGCATTTGATATTGGCTTTATAACTACTGATGATTTCACAAATGCG
EST: CAAGAATATTTGCTGCATATTTGAATAAACTTGGGAAAAAGGCTCGGCAG TATGATGCGTTTGATATTGGCTTTATAACTACTGATGATTTCACAAATGCGEST: gi|58686338|gb|CK075025.1|CK075025
genomic: CAAGAATATTTGCTGCATATTTGAATAAACTTGGGAAAAAGGCTCGGCAGgtacatgctt ... ttgattgcagTATGATGCATTTGATATTGGCTTTATAACTACTGATGATTTCACAAATGCG
EST: GAATATTTGCTGCATATTTGAATAAACTTGGGAAAAAGGCTCGGCAG TATGATGCGTTTGATATTGGCTTTATAACTACTGATGATTTCACAAATGCGEST: gi|29613802|gb|CB618815.1|CB618815
genomic: GAATATTTGCTGCATATTTGAATAAACTTGGGAAAAAGGCTCGGCAGgtacatgctt ... ttgattgcagTATGATGCATTTGATATTGGCTTTATAACTACTGATGATTTCACAAATGCG
EST: CAAGAATATTTGCTGCATATTTGAATAAACTTGGGAAAAAGGCTCGGCAG TATGATGCGTTTGATATTGGCTTTATAACTACTGATGATTTCACAAATGCGEST: gi|29618751|gb|CB623763.1|CB623763
genomic: CAAGAATATTTGCTGCATATTTGAATAAACTTGGGAAAAAGGCTCGGCAGgtacatgctt ... ttgattgcagTATGATGCATTTGATATTGGCTTTATAACTACTGATGATTTCACAAATGCG
EST: CAAGAATATTTGCTGCATATTTGAATAAACTTGGGAAAAAGGCTCGGCAG TATGATGCGTTTGATATTGGCTTTATAACTACTGATGATTTCACAAATGCGEST: gi|29683343|gb|CB679618.1|CB679618
genomic: CAAGAATATTTGCTGCATATTTGAATAAACTTGGGAAAAAGGCTCGGCAGgtacatgctt ... ttgattgcagTATGATGCATTTGATATTGGCTTTATAACTACTGATGATTTCACAAATGCG
EST: CAAGAATATTTGCTGCATATTTGAATAAACTTGGGAAAAAGGCTCGGCAG TATGATGCATTTGATATTGGCTTTATAACTACTGATGATTTCACAAATGCG
genomic: CAAGAATATTTGCTGCATATTTGAATAAACTTGGGAAAAAGGCTCGGCAGgtacatgctt ... ttgattgcagTATGATGCATTTGATATTGGCTTTATAACTACTGATGATTTCACAAATGCG
tggtggtccaggttttagcttgacgctgtctcaactaaattttgcttgattgcagTATGATGCATTTGATATTGGCTTTATAACTACTGATGATTTCACAAATGCGGACATTCTTGAAGCGACATATCCTGCTGTTGCAAAGAGGTTACAGGGTG
ttttgctt CT-rich tract
aactaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagcgtttacatgaagtttcagtgcgagcagttattggtatatgatggtggtccaggttttagcttgacgctgtctcaactaaattttgcttgattgcagTATGATGCATTTGATATTGGCTTTATAACTACTGATGATTTCACAAATGCGGACATTCTTGAAGCGACATATCCTGCTGTTGCAAAGAGGTTACAGGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - ttacatg
- - - - - - - - - - - tgcgagc
- - - - - - - - - - - - - - - - - - - - tatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attttgc