1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gaaagtcttataatatgaaacggaggaagtacttggtttcactagttcgtagttataagttttactaccaaaatacttaatctttctcgtcaacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGAATTAAGATCTAAAAGGGCTGACATGCAG
species | Oryza sativa |
transcript | LOC_Os03g62640.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29623911|gb|CB628922.1|CB628922
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29661287|gb|CB657562.1|CB657562
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29630312|gb|CB635321.1|CB635321
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29624088|gb|CB629099.1|CB629099
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGCTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29681987|gb|CB678262.1|CB678262
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCACTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29672226|gb|CB668501.1|CB668501
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29679242|gb|CB675517.1|CB675517
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|88689613|gb|CI733189.1|CI733189
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29627005|gb|CB632016.1|CB632016
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29635022|gb|CB640031.1|CB640031
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAAGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29681845|gb|CB678120.1|CB678120
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29681724|gb|CB677999.1|CB677999
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29678406|gb|CB674681.1|CB674681
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29629756|gb|CB634765.1|CB634765
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29680593|gb|CB676868.1|CB676868
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29674493|gb|CB670768.1|CB670768
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCTAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29664072|gb|CB660347.1|CB660347
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29660244|gb|CB656519.1|CB656519
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29636080|gb|CB641089.1|CB641089
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTNTGAAGGGAAAACTGATGAEST: gi|29639321|gb|CB644330.1|CB644330
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGA
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29629579|gb|CB634588.1|CB634588
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29617712|gb|CB622724.1|CB622724
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29665628|gb|CB661903.1|CB661903
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29629757|gb|CB634766.1|CB634766
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29674744|gb|CB671019.1|CB671019
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29678347|gb|CB674622.1|CB674622
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|29626366|gb|CB631377.1|CB631377
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGEST: gi|88367212|gb|CI563976.1|CI563976
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
EST: GCAGTTGTCAAAGGAGATCAAGGGAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAA-CTGATGANTAAA-TCAAGACCATGGAAGTGGTGGAAEST: gi|29656040|gb|CB652315.1|CB652315
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGA-TAAAATCAAGACCATGGAAGTGGTGGAA
EST: GCAGTTGTCAAGGGAGATCGAGGAAAAAATGAAAGAAGTTGATACCTATG ATTTTGAAGGGAAAACTGATGATAAAATCAACACCATGGAAGTGGTGGAAG
genomic: GCAGTTGTCAAAGGAGATCAAGGAAAAAATGAAAGAAGTTGATACCTATGgtaacgatat ... caacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAG
ttcgtagttataagttttactaccaaaatacttaatctttctcgtcaacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGAATTAAGATCTAAAAGGGCTGACATGCAG
acttaat putative branch site (score: 4)
tctttctcgtc CT-rich tract
aaaatacttaatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagtcttataatatgaaacggaggaagtacttggtttcactagttcgtagttataagttttactaccaaaatacttaatctttctcgtcaacatgtagATTTTGAAGGGAAAACTGATGATAAAATCAAGACCATGGAAGTGGTGGAAGAATTAAGATCTAAAAGGGCTGACATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA