1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagcaaagatgcaatggattatttctggtttagatggctttcaccatattccttgataagtttactacctgtagttttagtgacaattgttaagacatatcaatggcactgtttatttcttcattgtttcatatatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCTGCCTTCCTCGCTCTCCGACAGATTGAAGCTGCCAGGGAGATCTCTCACA
species | Oryza sativa |
transcript | LOC_Os03g62490.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCCCAG GGTGAGGCTAAGAGTGCACACCTGATTGGTGAGGCGATTAACAACAACCCTEST: gi|87035040|gb|CI189664.1|CI189664
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAG GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCTEST: gi|89173097|gb|CI040990.1|CI040990
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAG GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCTEST: gi|27578329|gb|CB001024.1|CB001024
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAG GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCTEST: gi|89180145|gb|CI044424.1|CI044424
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAG GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCTEST: gi|86855734|gb|CI269061.1|CI269061
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAG GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCTEST: gi|89174055|gb|CI041948.1|CI041948
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: TCATCAGAGCACAG GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCTEST: gi|88837135|gb|CI078495.1|CI078495
genomic: TCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: CGATCATCAGAGCACAG GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCTEST: gi|27576639|gb|CA999333.1|CA999333
genomic: CGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAG GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCTEST: gi|87028654|gb|CI266053.1|CI266053
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: AGTGCGATCATCAGAGCACAG GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCTEST: gi|27577573|gb|CB000268.1|CB000268
genomic: AGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAG GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCTEST: gi|88844069|gb|CI001126.1|CI001126
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
EST: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAG GGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
genomic: TTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaag ... gcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCT
atatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCTGCCTTCCTCGCTCTCCGACAGATTGAAGCTGCCAGGGAGATCTCTCACA
gtctgac putative branch site (score: 6)
cctgctt putative PPT
atttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaaagatgcaatggattatttctggtttagatggctttcaccatattccttgataagtttactacctgtagttttagtgacaattgttaagacatatcaatggcactgtttatttcttcattgtttcatatatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacagGGTGAGGCTAAGAGTGCACAGCTGATTGGTGAGGCGATTAACAACAACCCTGCCTTCCTCGCTCTCCGACAGATTGAAGCTGCCAGGGAGATCTCTCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC