1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcagcttttgctaagtgtctactataaccaccacttttggaactacgagtatagttacttgtaaccatcggcttcacgttttctgttttgtttgttctagAAAACACATGTTATACATTGGGTGAGGGTAGATTGCCATGAGTCAGTTGACGAAGCATATGAGGACGGGAAGAATCAGCTGGAAGCTTTGTTATCAAGAT
species | Oryza sativa |
transcript | LOC_Os03g61120.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCATTTAGGCCTCTACAATGACATAGTTGTGTTTGATCATGTTGAAAAG AAAACACATGTTATACATTGGGTGAGGGTAGATTGCCATGAGTCAGTTGACEST: gi|24468862|gb|CA305811.1|CA305811
genomic: TCCATTTAGGCCTCTACAATGACATAGTTGTGTTTGATCATGTTGAAAAGgtatgaataa ... tttgttctagAAAACACATGTTATACATTGGGTGAGGGTAGATTGCCATGAGTCAGTTGAC
EST: TCCATTTAGGCCTCTACAATGACATAGTTGTGTTTGATCATGTTGAAAAG AAAACACATGTTATACATTGGGTGAGGGTAGATTGCCATGAGTCAGTTGACEST: gi|86901654|gb|CI310416.1|CI310416
genomic: TCCATTTAGGCCTCTACAATGACATAGTTGTGTTTGATCATGTTGAAAAGgtatgaataa ... tttgttctagAAAACACATGTTATACATTGGGTGAGGGTAGATTGCCATGAGTCAGTTGAC
EST: TCCATTTAGGCCTCTACAATGACATAGTTGTGTTTGATCATGTTGAAAAG AAAACACATGTTATACATTGGGTGAGGGTAGATTGCCATGAGTCAGTTGACEST: gi|58608239|gb|CK036272.1|CK036272
genomic: TCCATTTAGGCCTCTACAATGACATAGTTGTGTTTGATCATGTTGAAAAGgtatgaataa ... tttgttctagAAAACACATGTTATACATTGGGTGAGGGTAGATTGCCATGAGTCAGTTGAC
EST: TCCATTTAGGCCTCTACAATGACATAGTTGTGTTTGATCATGTTGAAAAG AAAACACATGTTATACATTGGGTGAGGGTAGATTGCCATGAGTCAGTTGAC
genomic: TCCATTTAGGCCTCTACAATGACATAGTTGTGTTTGATCATGTTGAAAAGgtatgaataa ... tttgttctagAAAACACATGTTATACATTGGGTGAGGGTAGATTGCCATGAGTCAGTTGAC
cgagtatagttacttgtaaccatcggcttcacgttttctgttttgtttgttctagAAAACACATGTTATACATTGGGTGAGGGTAGATTGCCATGAGTCAGTTGACGAAGCATATGAGGACGGGAAGAATCAGCTGGAAGCTTTGTTATCAAGAT
ttgtaac putative branch site (score: 24)
ttttctgttttgttt putative PPT
ttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagcttttgctaagtgtctactataaccaccacttttggaactacgagtatagttacttgtaaccatcggcttcacgttttctgttttgtttgttctagAAAACACATGTTATACATTGGGTGAGGGTAGATTGCCATGAGTCAGTTGACGAAGCATATGAGGACGGGAAGAATCAGCTGGAAGCTTTGTTATCAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - cttttgc
- - - - - - - - - - - - - -ccaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cggcttc