1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttctttttttcttgttttgatcttatgacaccaactattattcttattttcaccttccttttcagTTCTACCTGGATATGCAATTTGTCATCCTTTCCGGGCGAGGCCGTTTCTTATCTCGGCACGTACATCAAGTGATACTGAAAATCATTGATAGAGCAATGG
species | Oryza sativa |
transcript | LOC_Os03g58970.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGAGATTGAAGAGGGGCCAAGGGCTCTGGGTCCCCTTGGACTTCAGCAG TTCTACCTGGATATGCAATTTGTCATCCTTTCCGGGCGAGGCCGTTTCTTAEST: gi|218490678|gb|FG953058.1|FG953058
genomic: AAGAGATTGAAGAGGGGCCAAGGGCTCTGGGTCCCCTTGGACTTCAGCAGgtgagttctt ... tccttttcagTTCTACCTGGATATGCAATTTGTCATCCTTTCCGGGCGAGGCCGTTTCTTA
EST: AAGAGATTGAAGAGGGGCCAAGGGCTCTGGGTCCCCTTGGACTTCAGCAG TTCTACCTGGATATGCAATTTGTCATCCTTTCCGGGCGAGGCCGTTTCTTAEST: gi|27545945|gb|CA767154.2|CA767154
genomic: AAGAGATTGAAGAGGGGCCAAGGGCTCTGGGTCCCCTTGGACTTCAGCAGgtgagttctt ... tccttttcagTTCTACCTGGATATGCAATTTGTCATCCTTTCCGGGCGAGGCCGTTTCTTA
EST: AAGAGGTTGAAGAGGGGCCAAGGGCTCTGGGTCCCCTTGGACTTCGGCAG TTCTACCTGGATATGCAATTTGTCATCCTTTCCGGGCGAGGCCGTTTCTTA
genomic: AAGAGATTGAAGAGGGGCCAAGGGCTCTGGGTCCCCTTGGACTTCAGCAGgtgagttctt ... tccttttcagTTCTACCTGGATATGCAATTTGTCATCCTTTCCGGGCGAGGCCGTTTCTTA
cttgttttgatcttatgacaccaactattattcttattttcaccttccttttcagTTCTACCTGGATATGCAATTTGTCATCCTTTCCGGGCGAGGCCGTTTCTTATCTCGGCACGTACATCAAGTGATACTGAAAATCATTGATAGAGCAATGG
ttttgat putative branch site (score: 15)
ctattattcttatttt putative PPT
aactattattcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttctttttttcttgttttgatcttatgacaccaactattattcttattttcaccttccttttcagTTCTACCTGGATATGCAATTTGTCATCCTTTCCGGGCGAGGCCGTTTCTTATCTCGGCACGTACATCAAGTGATACTGAAAATCATTGATAGAGCAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA