1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgccactgaagtggatcaattcatatcatacaattttacaaatgcaatcttcctcatttctgccaatgtttgctcatccatatgctcctgcttgcatcagGTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATACCTCCAAAGTGGATGTAACAATTCTGTGGGGAGCAAAGCCTCATCACTC
species | Oryza sativa |
transcript | LOC_Os03g58530.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATNTGAAGAAAAG GTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATAEST: gi|88987559|gb|CI034472.1|CI034472
genomic: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAGgtaaactgag ... cttgcatcagGTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATA
EST: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAG GTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATAEST: gi|88849191|gb|CI087713.1|CI087713
genomic: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAGgtaaactgag ... cttgcatcagGTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATA
EST: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAG GTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATAEST: gi|88839650|gb|CI015741.1|CI015741
genomic: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAGgtaaactgag ... cttgcatcagGTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATA
EST: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAG GTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATAEST: gi|15008655|gb|AU223043.1|AU223043
genomic: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAGgtaaactgag ... cttgcatcagGTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATA
EST: GAAAGGATCTCCAAAAGTCCAATGGTGCTACTGTGCAATNTGAAGAAAAG GTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCNATAEST: gi|86536262|gb|CI176468.1|CI176468
genomic: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAGgtaaactgag ... cttgcatcagGTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATA
EST: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAG GTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATAEST: gi|44673976|gb|CR287410.1|CR287410
genomic: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAGgtaaactgag ... cttgcatcagGTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATA
EST: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGCGCAATCTGAAGAAAAG GTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATAEST: gi|88204685|gb|CI204534.1|CI204534
genomic: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAGgtaaactgag ... cttgcatcagGTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATA
EST: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAG GTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATAEST: gi|87032905|gb|CI187529.1|CI187529
genomic: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAGgtaaactgag ... cttgcatcagGTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATA
EST: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAG GTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATAEST: gi|15008654|gb|AU223042.1|AU223042
genomic: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAGgtaaactgag ... cttgcatcagGTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATA
EST: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAG GTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATAEST: gi|88239337|gb|CI240499.1|CI240499
genomic: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAGgtaaactgag ... cttgcatcagGTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATA
EST: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAG GTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATAEST: gi|88284937|gb|CI406383.1|CI406383
genomic: GAAAGGATCTACAAAAGTCCAATGGTGCTACTGTGCAATCTGAAGAAAAGgtaaactgag ... cttgcatcagGTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATA
EST: CAATGGTGGTACTGTGCAATCTGAAGAAAAG GTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATAEST: gi|86873864|gb|CI334396.1|CI334396
genomic: CAATGGTGCTACTGTGCAATCTGAAGAAAAGgtaaactgag ... cttgcatcagGTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATA
EST: CCAATGGTGCTACTGTGCAATCTGAAGAAAAG GTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATA
genomic: CCAATGGTGCTACTGTGCAATCTGAAGAAAAGgtaaactgag ... cttgcatcagGTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATA
aatcttcctcatttctgccaatgtttgctcatccatatgctcctgcttgcatcagGTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATACCTCCAAAGTGGATGTAACAATTCTGTGGGGAGCAAAGCCTCATCACTC
ctcctgctt CT-rich tract
aatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgccactgaagtggatcaattcatatcatacaattttacaaatgcaatcttcctcatttctgccaatgtttgctcatccatatgctcctgcttgcatcagGTGCAGTCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATACCTCCAAAGTGGATGTAACAATTCTGTGGGGAGCAAAGCCTCATCACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
-gccactg
- - - - - gtggatc
- - - - - - - - - - - - - catacaa
- - - - - - - - - - - - - - - - - - - -aaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctcctg