1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtatcatgtctagcactttttatcatgttgatgtaatgagaatgatgtttccatgaaaatggattatttcatgggggaatttcataagaaataatgaacagtcctttggatagggtttagcaccagtagtattatgactgtctcacacttatgatttggcaatgaaatttttgctcaatacagGACCTTGGAGGATCACTTGGAAGAGATGCAGCTACTGGAAGGGGAGTTCTGTTTGCTACTGAAGCCTTGCTTGCAGAGCATGGCAAGGGCATTGCTGGCC
species | Oryza sativa |
transcript | LOC_Os03g58040.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTCAAAGTTTCATGGTTATTCACCTGCTGTGGTGACTGGAAAACCTGTT GACCTTGGAGGATCACTTGGAAGAGATGCAGCTACTGGAAGGGGAGTTCTGEST: gi|58680379|gb|CK069066.1|CK069066
genomic: ACTCAAAGTTTCATGGTTATTCACCTGCTGTGGTGACTGGAAAACCTGTTgtaagtatca ... ctcaatacagGACCTTGGAGGATCACTTGGAAGAGATGCAGCTACTGGAAGGGGAGTTCTG
EST: ACTCAAAGTTTCATGGTTATTCACCTGCTGTGGTGACTGGAAAACCTGTT GACCTTGGAGGATCACTTGGAAGAGATGCAGCTACTGGAAGGGGAGTTCTGEST: gi|88428743|gb|CI599459.1|CI599459
genomic: ACTCAAAGTTTCATGGTTATTCACCTGCTGTGGTGACTGGAAAACCTGTTgtaagtatca ... ctcaatacagGACCTTGGAGGATCACTTGGAAGAGATGCAGCTACTGGAAGGGGAGTTCTG
EST: ACTCAAAGTTT-ATGGTTATTCAC-TGCTGTGGTGACTGGAAAAC-TGTT GACCTTGGAGGATAACTTGGAAAAAATG-AGCTACTGGAAGGGGAGT-CTGEST: gi|29673988|gb|CB670263.1|CB670263
genomic: ACTCAAAGTTTCATGGTTATTCACCTGCTGTGGTGACTGGAAAACCTGTTgtaagtatca ... ctcaatacagGACCTTGGAGGATCACTTGGAAGAGATGCAGCTACTGGAAGGGGAGTTCTG
EST: ACTCAAAGTTTCATGGTTATTCACCTGCTGTGGTGACTGGAAAACCTGTT GACCTTGGAGGATCACTTGGAAGAGATGCAGCTACTGGAAGGGGAGTTCTGEST: gi|163928511|gb|EG711396.1|EG711396
genomic: ACTCAAAGTTTCATGGTTATTCACCTGCTGTGGTGACTGGAAAACCTGTTgtaagtatca ... ctcaatacagGACCTTGGAGGATCACTTGGAAGAGATGCAGCTACTGGAAGGGGAGTTCTG
EST: ACTCAAAGTTTCATGGTTATTCACCTGCTGTGGTGACTGGAAAACCTGTT GACCTTGGAGGATCACTTGGAAGAGATGCAGCTACTGGAAGGGGAGTTCTGEST: gi|29679310|gb|CB675585.1|CB675585
genomic: ACTCAAAGTTTCATGGTTATTCACCTGCTGTGGTGACTGGAAAACCTGTTgtaagtatca ... ctcaatacagGACCTTGGAGGATCACTTGGAAGAGATGCAGCTACTGGAAGGGGAGTTCTG
EST: ACTCAAAGTTTCATGGTTATTCACCTGCTGTGGTGACTGGAAAACCTGTT GACCTTGGAGGATCACTTGGAAGAGATGCAGCTACTGGAAGGGGAGTTCTGEST: gi|88314120|gb|CI602452.1|CI602452
genomic: ACTCAAAGTTTCATGGTTATTCACCTGCTGTGGTGACTGGAAAACCTGTTgtaagtatca ... ctcaatacagGACCTTGGAGGATCACTTGGAAGAGATGCAGCTACTGGAAGGGGAGTTCTG
EST: ACTCAAAGTTTCATGGTTATTCACCTGCTGTGGTGACTGGAAAACCTGTT GACCTTGGAGGATCAATTGGAAGGGATGCAGCTACTGGAAGGGGAGTTCTG
genomic: ACTCAAAGTTTCATGGTTATTCACCTGCTGTGGTGACTGGAAAACCTGTTgtaagtatca ... ctcaatacagGACCTTGGAGGATCACTTGGAAGAGATGCAGCTACTGGAAGGGGAGTTCTG
gtattatgactgtctcacacttatgatttggcaatgaaatttttgctcaatacagGACCTTGGAGGATCACTTGGAAGAGATGCAGCTACTGGAAGGGGAGTTCTGTTTGCTACTGAAGCCTTGCTTGCAGAGCATGGCAAGGGCATTGCTGGCC
gtctcac putative branch site (score: 3)
tttttgctc putative PPT
aatgaaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatcatgtctagcactttttatcatgttgatgtaatgagaatgatgtttccatgaaaatggattatttcatgggggaatttcataagaaataatgaacagtcctttggatagggtttagcaccagtagtattatgactgtctcacacttatgatttggcaatgaaatttttgctcaatacagGACCTTGGAGGATCACTTGGAAGAGATGCAGCTACTGGAAGGGGAGTTCTGTTTGCTACTGAAGCCTTGCTTGCAGAGCATGGCAAGGGCATTGCTGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA