1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctcaagctgatccagtcggttgctattctatagtatcttctgtaaatttcccatccttgacttactgcatgtgtgtgctctcgtgctgtgttattgacagATCTTATAAGGGCCCTGAACTTCTTGTGGATTTGCTAGATTATGATTACTCGTTGGATTTGTGGAGCCTTGGTTGCATGTTTGCCGCAATG
species | Oryza sativa |
transcript | LOC_Os03g55490.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAGAGTTCTATCATCCCAAGATGGAATATAATGCTAGAGTTGCTTCAAG ATCTTATAAGGGCCCTGAACTTCTTGTGGATTTGCTAGATTATGATTACTCEST: gi|66915335|gb|CX102183.1|CX102183
genomic: GCAGAGTTCTATCATCCCAAGATGGAATATAATGCTAGAGTTGCTTCAAGgttagtctcc ... ttattgacagATCTTATAAGGGCCCTGAACTTCTTGTGGATTTGCTAGATTATGATTACTC
EST: GCAGAGTTCTATCATCCCAAGATGGAATATAATGCTAGAGTTGCTTCAAG ATCTTATAAGGGCCCTGAACTTCTTGTGGATTTGCTAGATTATGATTACTCEST: gi|86595025|gb|CI260264.1|CI260264
genomic: GCAGAGTTCTATCATCCCAAGATGGAATATAATGCTAGAGTTGCTTCAAGgttagtctcc ... ttattgacagATCTTATAAGGGCCCTGAACTTCTTGTGGATTTGCTAGATTATGATTACTC
EST: CTATCATCCCAAGATGGAATATAATGCTAGAGTTGCTTCAAG ATCTTATAAGGGCCCTGAACTTCTTGTGGATTTGCTAGATTATGATTACTCEST: gi|58600117|gb|CK010645.1|CK010645
genomic: CTATCATCCCAAGATGGAATATAATGCTAGAGTTGCTTCAAGgttagtctcc ... ttattgacagATCTTATAAGGGCCCTGAACTTCTTGTGGATTTGCTAGATTATGATTACTC
EST: GCAGAGTTCTATCATCCCAAGATGGAATATAATGCTAGAGTTGCTTCAAG ATCTTATAAGGGCCCTGAACTTCTTGTGGATTTGCTAGATTATGATTACTC
genomic: GCAGAGTTCTATCATCCCAAGATGGAATATAATGCTAGAGTTGCTTCAAGgttagtctcc ... ttattgacagATCTTATAAGGGCCCTGAACTTCTTGTGGATTTGCTAGATTATGATTACTC
atttcccatccttgacttactgcatgtgtgtgctctcgtgctgtgttattgacagATCTTATAAGGGCCCTGAACTTCTTGTGGATTTGCTAGATTATGATTACTCGTTGGATTTGTGGAGCCTTGGTTGCATGTTTGCCGCAATG
gacttac putative branch site (score: 14)
tgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcaagctgatccagtcggttgctattctatagtatcttctgtaaatttcccatccttgacttactgcatgtgtgtgctctcgtgctgtgttattgacagATCTTATAAGGGCCCTGAACTTCTTGTGGATTTGCTAGATTATGATTACTCGTTGGATTTGTGGAGCCTTGGTTGCATGTTTGCCGCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - ctgatcc
- - - - - - - - cggttgc
- - - - - - - - - - - - - - - - - - -ttctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgctg