1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tggaatagatcatgcaattattgcttactaatgcgtcaattctttgctcatttttgctttggtacctgagttgagcatatggtttctcgtttttattcagGTATTTCAAGGGGCCTGAGCTTCTTGTTGATTTGCAAGATTATGATTATTCTTTGGACATGTGGAGCCTTGGTTGCATGTTTGCTGGGATG
species | Oryza sativa |
transcript | LOC_Os03g55389.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTGAGTTCTATCATCCAGGGAAGGAATATAATGTTCGTGTTGCTTCAAG GTATTTCAAGGGGCCTGAGCTTCTTGTTGATTTGCAAGATTATGATTATTCEST: gi|5607312|gb|AU075984.1|AU075984
genomic: GCTGAGTTCTATCATCCAGGGAAGGAATATAATGTTCGTGTTGCTTCAAGgttggtgtag ... ttttattcagGTATTTCAAGGGGCCTGAGCTTCTTGTTGATTTGCAAGATTATGATTATTC
EST: CTGAGTTCTATCATCCCAGGGAAGGAATATAATGTTCGTGTTGCTTCAAG GTATTTCAAGGGGCCTGAGCTTCTTGTTGATTTGCAAGATTATGATTATTCEST: gi|29614063|gb|CB619076.1|CB619076
genomic: CTGAGTTCTATCAT-CCAGGGAAGGAATATAATGTTCGTGTTGCTTCAAGgttggtgtag ... ttttattcagGTATTTCAAGGGGCCTGAGCTTCTTGTTGATTTGCAAGATTATGATTATTC
EST: GCTGAGTTCTATCATCCAGGGAAGGAATATAATGTTCGTGTTGCTTCAAG GTATTTCAAGGGGCCTGAGCTTCTTGTTGATTTGCAAGATTATGATTATTCEST: gi|218492474|gb|FG956256.1|FG956256
genomic: GCTGAGTTCTATCATCCAGGGAAGGAATATAATGTTCGTGTTGCTTCAAGgttggtgtag ... ttttattcagGTATTTCAAGGGGCCTGAGCTTCTTGTTGATTTGCAAGATTATGATTATTC
EST: GCTGAGTTCTATCATCCAGNGAAGGAATATAATGTTCGTGTTGCTTCAAG GTATTTCAAGGGGCCTGAGCTTCTTGTTGATTTGCAAGATTATGATTATTC
genomic: GCTGAGTTCTATCATCCAGGGAAGGAATATAATGTTCGTGTTGCTTCAAGgttggtgtag ... ttttattcagGTATTTCAAGGGGCCTGAGCTTCTTGTTGATTTGCAAGATTATGATTATTC
gctcatttttgctttggtacctgagttgagcatatggtttctcgtttttattcagGTATTTCAAGGGGCCTGAGCTTCTTGTTGATTTGCAAGATTATGATTATTCTTTGGACATGTGGAGCCTTGGTTGCATGTTTGCTGGGATG
tttctcgtttttattc CT-rich tract
tttttattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaatagatcatgcaattattgcttactaatgcgtcaattctttgctcatttttgctttggtacctgagttgagcatatggtttctcgtttttattcagGTATTTCAAGGGGCCTGAGCTTCTTGTTGATTTGCAAGATTATGATTATTCTTTGGACATGTGGAGCCTTGGTTGCATGTTTGCTGGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - -tcatgca
- - - - - - - - - - -tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatatg