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...ttttttttttaccgtagggggtagcttattagttgcatcttattttataaacaagagtaagattagtgcacaaatatattcaaacctcttcaacttgcagGTTGGATATGCTATGCAGAAAAGACTCTCGGTTCATTTATCTTGCCTTACATCTCAGCTGTGAAGAGCCCCCAACAGGCCATTGGTGCTGCTATCAAGCA
species | Oryza sativa |
transcript | LOC_Os03g53750.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGCAAAGGAGCTGGAAAAAATCTTCCCATGCTTTCATCTGCATGCCCAG GTTGGATATGCTATGCAGAAAAGACTCTCGGTTCATTTATCTTGCCTTACAEST: gi|33678479|gb|CF306718.1|CF306718
genomic: TGGCAAAGAAGCTGGAAAAAATCTTCCCATGCTTTCATCTGCATGCCCAGgtaaaattgt ... caacttgcagGTTGGATATGCTATGCAGAAAAGACTCTCGGTTCATTTATCTTGCCTTACA
EST: TGGCAAAGAAGCTGGAAAAAATCTTCCCATGCTTTCATCTGCATGCCCAG GTTGGATATGCTATGCAGAAAAGACTCTCGGTTCATTTATCTTGCCTTACAEST: gi|29638416|gb|CB643425.1|CB643425
genomic: TGGCAAAGAAGCTGGAAAAAATCTTCCCATGCTTTCATCTGCATGCCCAGgtaaaattgt ... caacttgcagGTTGGATATGCTATGCAGAAAAGACTCTCGGTTCATTTATCTTGCCTTACA
EST: TGGCAAAGAAGCTGGAAAAAATCTTCCCATGCTTTCATCTGCATGCCCAG GTTGGATATGCTATGCAGAAAAGACTCTCGGTTCATTTATCTTGCCTTACAEST: gi|218489808|gb|FG954312.1|FG954312
genomic: TGGCAAAGAAGCTGGAAAAAATCTTCCCATGCTTTCATCTGCATGCCCAGgtaaaattgt ... caacttgcagGTTGGATATGCTATGCAGAAAAGACTCTCGGTTCATTTATCTTGCCTTACA
EST: CATCTGCATGCCCAG GTTGGATATGCTATGCAGAAAAGACTCTCGGTTCATTTATCTTGCCTTACA
genomic: CATCTGCATGCCCAGgtaaaattgt ... caacttgcagGTTGGATATGCTATGCAGAAAAGACTCTCGGTTCATTTATCTTGCCTTACA
tataaacaagagtaagattagtgcacaaatatattcaaacctcttcaacttgcagGTTGGATATGCTATGCAGAAAAGACTCTCGGTTCATTTATCTTGCCTTACATCTCAGCTGTGAAGAGCCCCCAACAGGCCATTGGTGCTGCTATCAAGCA
cctcttc CT-rich tract
acaaatatattcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttttttaccgtagggggtagcttattagttgcatcttattttataaacaagagtaagattagtgcacaaatatattcaaacctcttcaacttgcagGTTGGATATGCTATGCAGAAAAGACTCTCGGTTCATTTATCTTGCCTTACATCTCAGCTGTGAAGAGCCCCCAACAGGCCATTGGTGCTGCTATCAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - -tgcatct
- - - - - - - - - - - - - - - - - - - - - - - - -aacaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacaaa