1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgcttatcatatagccattataggtctcttaactacttgttacattctcagcacatcaactgcattatgcatactaacttgatctactacaaacacacagATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACACGATTGAATGCGAGGGTTCAGAAG
species | Oryza sativa |
transcript | LOC_Os03g53110.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGAGTTGGAGAGTGCTGCTTACCCAGCTTTGGATGAACTGACATCCAAG ATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACAEST: gi|29659796|gb|CB656071.1|CB656071
genomic: CTGAGTTGGAGAGTGCTGCTTACCCAGCTTTGGATGAACTGACATCCAAGgtgactgaat ... aaacacacagATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACA
EST: CTGAGTTGGAGAGTGCTGCTTACCCAGCTTTGGATGAACTGACATCCAAG ATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACAEST: gi|27547079|gb|CA767318.2|CA767318
genomic: CTGAGTTGGAGAGTGCTGCTTACCCAGCTTTGGATGAACTGACATCCAAGgtgactgaat ... aaacacacagATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACA
EST: CTGAGTTGGAGAGTGCTGCTTACCCAGCTTTGGATGAACTGACATCCAAG ATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACA
genomic: CTGAGTTGGAGAGTGCTGCTTACCCAGCTTTGGATGAACTGACATCCAAGgtgactgaat ... aaacacacagATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACA
tctcagcacatcaactgcattatgcatactaacttgatctactacaaacacacagATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACACGATTGAATGCGAGGGTTCAGAAG
atactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcttatcatatagccattataggtctcttaactacttgttacattctcagcacatcaactgcattatgcatactaacttgatctactacaaacacacagATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACACGATTGAATGCGAGGGTTCAGAAG
tgcttat
- - - - - - - - - - - - - - - - ctacttg
- - - - - - - - - - - - - - - - - - - - - - - - - gcacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatac