1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagaattctgtacgagcgtccttcttagccttttcgccttcagaaaaagctaatgcttcctattcactgtttcaaacattcagAACACATCGTCCCATGAAGGGCAGGTACGGTTTCTTGTATATACGTTGGAGAATGCAATCCTCAGCTTGCCTGAAGATCAAGAGAAAATGGTTTGGTTGA
species | Oryza sativa |
transcript | LOC_Os03g51430.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTAGATAGAGAGGGGAGAACTGTCGTCATTATGAGACCCGCAAAGCAG AACACATCGTCCCATGAAGGGCAGGTACGGTTTCTTGTATATACGTTGGAGEST: gi|38481079|gb|CF965168.1|CF965168
genomic: TTGTAGATAGAGAGGGGAGAACTGTCGTCATTATGAGACCCGCAAAGCAGgtaagaattc ... aaacattcagAACACATCGTCCCATGAAGGGCAGGTACGGTTTCTTGTATATACGTTGGAG
EST: TTGTAGATAGAGAGGGGAGAACTGTCGTCATTATGAGACCCGCAAAGCAG AACACATCGTCCCATGAAGGGCAGGTACGGTTTCTTGTATATACGTTGGAG
genomic: TTGTAGATAGAGAGGGGAGAACTGTCGTCATTATGAGACCCGCAAAGCAGgtaagaattc ... aaacattcagAACACATCGTCCCATGAAGGGCAGGTACGGTTTCTTGTATATACGTTGGAG
ccttttcgccttcagaaaaagctaatgcttcctattcactgtttcaaacattcagAACACATCGTCCCATGAAGGGCAGGTACGGTTTCTTGTATATACGTTGGAGAATGCAATCCTCAGCTTGCCTGAAGATCAAGAGAAAATGGTTTGGTTGA
agctaat putative branch site (score: 7)
agaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaattctgtacgagcgtccttcttagccttttcgccttcagaaaaagctaatgcttcctattcactgtttcaaacattcagAACACATCGTCCCATGAAGGGCAGGTACGGTTTCTTGTATATACGTTGGAGAATGCAATCCTCAGCTTGCCTGAAGATCAAGAGAAAATGGTTTGGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA