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gtatccttcccttttgatacatttgatccatgacaaatatattgactttgattttgtgaatgttttattgaccgcataatatagACATCTCCGAGGTTGATAAAAATCAACTGGTTTTATATGCTCAGATGGCCAATCTTGTCCAACTGATTCTTCCTTCATTCGAGCTTGATCTTAAGGAAAT
species | Oryza sativa |
transcript | LOC_Os03g49730.3 |
intron # | 4 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TCCATCTTCAGGAACAGATAACTACAATCTAGTGGATGCATTAGAATCCC ACATCTCCGAGGTTGATAAAAATCAACTGGTTTTATATGCTCAGATGGCCAEST: gi|58669228|gb|CK057914.1|CK057914
genomic: TCCATCTTCAGGAACAGATAACTACAATCTAGTGGATGCATTAGAATCCCgtatccttcc ... cataatatagACATCTCCGAGGTTGATAAAAATCAACTGGTTTTATATGCTCAGATGGCCA
EST: TCCATCTTCAGGAACAGATAACTACAATCTAGTGGATGCATTAGAATCCC ACATCTCCGAGGTTGATAAAAATCAACTGGTTTTATATGCTCAGATGGCCA
genomic: TCCATCTTCAGGAACAGATAACTACAATCTAGTGGATGCATTAGAATCCCgtatccttcc ... cataatatagACATCTCCGAGGTTGATAAAAATCAACTGGTTTTATATGCTCAGATGGCCA
atgacaaatatattgactttgattttgtgaatgttttattgaccgcataatatagACATCTCCGAGGTTGATAAAAATCAACTGGTTTTATATGCTCAGATGGCCAATCTTGTCCAACTGATTCTTCCTTCATTCGAGCTTGATCTTAAGGAAAT
tttattgac putative branch site
aaatatattgactttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccttcccttttgatacatttgatccatgacaaatatattgactttgattttgtgaatgttttattgaccgcataatatagACATCTCCGAGGTTGATAAAAATCAACTGGTTTTATATGCTCAGATGGCCAATCTTGTCCAACTGATTCTTCCTTCATTCGAGCTTGATCTTAAGGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA