1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tggggatgctatttttgtgtcatcttttttacacaaacaatctagtgcctttctgatgttttcatccttatgttttcaaactggcctttccttgaaacagCACTATGAAGGGGACGTTGAGGACCTATGTTTGGATTTTACTCTGACTGAAGAGTTGGGTGGTAGAAGAATTGTCCATGAACTGAGGCCTGGTGGTAAAA
species | Oryza sativa |
transcript | LOC_Os03g47949.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACTATCAACTCTTGATTCTGAGCTTTACAGAAGTCTAATGCAACTCAAG CACTATGAAGGGGACGTTGAGGACCTATGTTTGGATTTTACTCTGACTGAAEST: gi|58605098|gb|CK033131.1|CK033131
genomic: AACTATCAACTCTTGATTCTGAGCTTTACAGAAGTCTAATGCAACTCAAGgtactgtttt ... cttgaaacagCACTATGAAGGGGACGTTGAGGACCTATGTTTGGATTTTACTCTGACTGAA
EST: AACTATCAACTCTTGATTCTGAGCTTTACAGAAGTCTAATGCAACTCAAG CACTATGAAGGGGACGT
genomic: AACTATCAACTCTTGATTCTGAGCTTTACAGAAGTCTAATGCAACTCAAGgtactgtttt ... cttgaaacagCACTATGAAGGGGACGT
tgcctttctgatgttttcatccttatgttttcaaactggcctttccttgaaacagCACTATGAAGGGGACGTTGAGGACCTATGTTTGGATTTTACTCTGACTGAAGAGTTGGGTGGTAGAAGAATTGTCCATGAACTGAGGCCTGGTGGTAAAA
ttctgat putative branch site (score: 11)
cctttcctt putative PPT
ttatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggggatgctatttttgtgtcatcttttttacacaaacaatctagtgcctttctgatgttttcatccttatgttttcaaactggcctttccttgaaacagCACTATGAAGGGGACGTTGAGGACCTATGTTTGGATTTTACTCTGACTGAAGAGTTGGGTGGTAGAAGAATTGTCCATGAACTGAGGCCTGGTGGTAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- gggatgc
- - - - - - - - - - - - - - - - acaaaca
- - - - - - - - - - - - - - - - - - - - - - gtgcctt
- - - - - - - - - - - - - - - - - - - - - - - - - -tctgatg