1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtgactttctttatacactcattttcatttgcctgttttttcttttgttgtcatgacattttgttgctttcttagGTATCCAAAAGATTCAGAAAAGCTGATGCTAGCGAGACAAACTGGCTTAACAAGAAGTCAG
species | Oryza sativa |
transcript | LOC_Os03g47740.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACTCAGTTTCAATTCTTCGTGCTTGGCTTTTTGAACACTTCCTTCACCC GTATCCAAAAGATTCAGAAAAGCTGATGCTAGCGAGACAAACTGGCTTAACEST: gi|55828195|gb|AU067843.2|AU067843
genomic: AACTCAGTTTCAATTCTTCGTGCTTGGCTTTTTGAACACTTCCTTCACCCgtaagtgact ... gctttcttagGTATCCAAAAGATTCAGAAAAGCTGATGCTAGCGAGACAAACTGGCTTAAC
EST: AACTCAGTTTCAATTCTTCGTGCTTGGCTTTTTGAACACTTCCTTCACCC GTATCCAAAAGATTCAGAAAAGCTGATGCTAGCGAGACAAACTGGCTTAACEST: gi|66915479|gb|CX102327.1|CX102327
genomic: AACTCAGTTTCAATTCTTCGTGCTTGGCTTTTTGAACACTTCCTTCACCCgtaagtgact ... gctttcttagGTATCCAAAAGATTCAGAAAAGCTGATGCTAGCGAGACAAACTGGCTTAAC
EST: AACTCAGTTTCAATTCTTCGTGCTTGGCTTTTTGAACACTTCCTTCACCC GTATCCAAAAGATTCAGAAAAGCTGATGCTAGCGAGACAAACTGGCTTAAC
genomic: AACTCAGTTTCAATTCTTCGTGCTTGGCTTTTTGAACACTTCCTTCACCCgtaagtgact ... gctttcttagGTATCCAAAAGATTCAGAAAAGCTGATGCTAGCGAGACAAACTGGCTTAAC
attttcatttgcctgttttttcttttgttgtcatgacattttgttgctttcttagGTATCCAAAAGATTCAGAAAAGCTGATGCTAGCGAGACAAACTGGCTTAACAAGAAGTCAG
ttttgttgctttctt CT-rich tract
ttttttcttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgactttctttatacactcattttcatttgcctgttttttcttttgttgtcatgacattttgttgctttcttagGTATCCAAAAGATTCAGAAAAGCTGATGCTAGCGAGACAAACTGGCTTAACAAGAAGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT