1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acttagatttcttctctctttctgtcagaaattgtcagttgattttattctatctttcaaattacttgctatgctaaactattgtctttgtgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGTACTTACCTGACGGAAG
species | Oryza sativa |
transcript | LOC_Os03g38960.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACCATTACGCGGEST: gi|88376199|gb|CI533101.1|CI533101
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|88215899|gb|CI215748.1|CI215748
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCCCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|86506229|gb|CI148862.1|CI148862
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGCTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCGTGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|88727042|gb|CI750697.1|CI750697
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCEST: gi|218497334|gb|FG955294.1|FG955294
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGC
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAACGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|218499405|gb|FG963729.1|FG963729
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|88517263|gb|CI444917.1|CI444917
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|163927473|gb|EG713889.1|EG713889
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGEST: gi|58681466|gb|CK070153.1|CK070153
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|38481397|gb|CF965486.1|CF965486
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|218496317|gb|FG954187.1|FG954187
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|25798016|gb|CA753977.1|CA753977
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|218487224|gb|FG954426.1|FG954426
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|218491289|gb|FG948708.1|FG948708
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|86416666|gb|CI030677.1|CI030677
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|86536627|gb|CI176833.1|CI176833
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|86904845|gb|CI310638.1|CI310638
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCAEST: gi|58600678|gb|CK011206.1|CK011206
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCA
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCEST: gi|218490022|gb|FG965705.1|FG965705
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCC
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|88456045|gb|CI567761.1|CI567761
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAACATCC-ATTCACAATTACGCGGEST: gi|88216290|gb|CI216139.1|CI216139
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|163928871|gb|EG711933.1|EG711933
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|218498533|gb|FG957594.1|FG957594
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|86507172|gb|CI149805.1|CI149805
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|88325209|gb|CI646631.1|CI646631
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAEST: gi|163917777|gb|EG711299.1|EG711299
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAA
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|88518337|gb|CI445991.1|CI445991
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: ACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|218484046|gb|FG946740.1|FG946740
genomic: ACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|88907433|gb|CI090227.1|CI090227
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|88302670|gb|CI668516.1|CI668516
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATEST: gi|58686251|gb|CK074938.1|CK074938
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGAT
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|163920983|gb|EG710396.1|EG710396
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|88289429|gb|CI555791.1|CI555791
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|88323979|gb|CI561388.1|CI561388
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: ATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|38468521|gb|CF952652.1|CF952652
genomic: ATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGEST: gi|58602936|gb|CK013464.1|CK013464
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGGCATGAAAGAGCTGAGAGCACGCAAEST: gi|86911562|gb|CI296648.1|CI296648
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAA
EST: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAG ATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
genomic: TGAATGCTCCAGTTATGGTTGAGCTTGAGGGAGAAACTGATCCTCTTGAGgtaaattcta ... tgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGG
tattctatctttcaaattacttgctatgctaaactattgtctttgtgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGTACTTACCTGACGGAAG
tgctaaa putative branch site (score: 111)
tctttgt putative PPT
tatctttcaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttagatttcttctctctttctgtcagaaattgtcagttgattttattctatctttcaaattacttgctatgctaaactattgtctttgtgcaaattagATTGCCATGAAAGAGCTGAGAGCACGCAAGATCCCATTCACAATTAGGCGGTACTTACCTGACGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - -ctttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgctaa