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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattgtattttttttgtattaaccatacatatgttctatttgatatttcccattaatttcgtgccagtgttcctcttgaatacacagCTGGAGTTTTTATAGAGCCAAAAAACTGGCCTCCATTCTTCCCCGTCATTCATGTTGATATCTCAAATGACATACCCGTGCACTTGCAGCGAGTGCAGTA

Basic information

species Oryza sativa
transcript LOC_Os03g38600.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g38600.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G124938_T01 (Zea mays), 3'ss of exon 4
gtaa--attgtattttttttgtattaaccatacatatgttctatttgatatttcccattaatttcgtgccagtgttcctcttgaatacacagCTGGAGTTTTTATAGAGCCAAAAAACTGGCCTCCATTCTTCCCCGTCATTCATGTTGATATCTCAAATGACATACCCGTGCACTTGCAGCGAGTGCAGTA
||||  ||  || |||| || | ||     |||   | ||||| | || ||  ||||| |||||      |   ||        |||  ||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||
gtaataatcttaattttgtttttttgcatgtaccatttttctaat-gaaatggcccataaattt------aaaatttt------atatgcagCTGGAGTTTTAATAGAGCCCAAAAACTGGCCACCGTTCTTCCCCGTCATTCATGTTGACATTTCAAATGATATACCCGTGCACTTGCAGCGAGTGCAGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttctatttgatatttcccattaatttcgtgccagtgttcctcttgaatacacagCTGGAGTTTTTATAGAGCCAAAAAACTGGCCTCCATTCTTCCCCGTCATTCATGTTGATATCTCAAATGACATACCCGTGCACTTGCAGCGAGTGCAGTA
                  cattaat  putative branch site (score: 3)
                                     ttcctcttg  putative PPT
     atttgatattt  TA-rich tract