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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttaactatgtcttttatagtttcatgttccttttaatttttaatccatgaaatgattgtgtttttttacttatttgttaatttgtttatatatctaatagGCTAAGAATCTTCCCACTGACAAGCTAAGGATTATATACATGGCAGTTAATGGTGTTATATATGTAATCCAG

Basic information

species Oryza sativa
transcript LOC_Os03g36790.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38472127|gb|CF956258.1|CF956258
EST:     TCTCGACATACACGCTACTTGTGCTGTTCTGGGCAGAAATATACCATCAG                         GCTAAGAATCTTCCCACTGACAAGCTAAGGATTATATACATGGCAGTTAAT
genomic: TCTCGACATACACGCTACTTGTGCTGTTCTGGGCAGAAATATACCATCAGgttttaacta ... tatctaatagGCTAAGAATCTTCCCACTGACAAGCTAAGGATTATATACATGGCAGTTAAT
EST: gi|218497390|gb|FG957738.1|FG957738
EST:     TCTCGACATACACGCTACTTGTGCTGTTCTGGGCAGAAATATACCATCAG                         GCTAAGAATCTTCCCACTGACAAGCTAAGGATTATATACATGGCAGTTAAT
genomic: TCTCGACATACACGCTACTTGTGCTGTTCTGGGCAGAAATATACCATCAGgttttaacta ... tatctaatagGCTAAGAATCTTCCCACTGACAAGCTAAGGATTATATACATGGCAGTTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgaaatgattgtgtttttttacttatttgttaatttgtttatatatctaatagGCTAAGAATCTTCCCACTGACAAGCTAAGGATTATATACATGGCAGTTAATGGTGTTATATATGTAATCCAG
                             tgttaat  putative branch site (score: 3)
               tttttttacttatttg  TA-rich tract