1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaactttatgcatattatttgtatcaacatacatagagccttcatttttgtcatgctctaagagccatcatgcttcttgagtcttctttgtgcacagcagtatgatttgggacaactcagaagtgctaactattgagacacatcattttaaacttaattgatatatatatgttctgatcttctttctgcagATTCTACCACCTAGGAAACTTCAAGCGTTTCTTCTGCGCCATAGCAGCTGAAGGAACCGATCTTCAGCTGCGTCTGTTAGAACCTTTTCTCAATGAG
species | Oryza sativa |
transcript | LOC_Os03g22870.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAATCAAAGGAAATGGTATTTGCTAGATCTATATTAAG ATTCTACCACCTAGGAAACTTCAAGCGTTTCTTCTGCGCCATAGCAGCTGAEST: gi|86497041|gb|CI139674.1|CI139674
genomic: CAATCAAAGGAAATGGTATTTGCTAGATCTATATTAAGgtaactttat ... ctttctgcagATTCTACCACCTAGGAAACTTCAAGCGTTTCTTCTGCGCCATAGCAGCTGA
EST: GCTTCAATTATACAATCAAAGGAAATGGTATTTGCTAGATCTATATTAAG ATTCTACCACCTAGGAAACTTCAAGCGTTTCTTCTGCGCCATAGCAGCTGAEST: gi|88964282|gb|CI045475.1|CI045475
genomic: GCTTCAATTATACAATCAAAGGAAATGGTATTTGCTAGATCTATATTAAGgtaactttat ... ctttctgcagATTCTACCACCTAGGAAACTTCAAGCGTTTCTTCTGCGCCATAGCAGCTGA
EST: GCTTCAATTATACAATCAAAGGAAATGGTATTTGCTAGATCTATATTAAG ATTCTACCACCTAGGAAACTTCAAGCGTTTCTTCTGCGCCATAGCAGCTGA
genomic: GCTTCAATTATACAATCAAAGGAAATGGTATTTGCTAGATCTATATTAAGgtaactttat ... ctttctgcagATTCTACCACCTAGGAAACTTCAAGCGTTTCTTCTGCGCCATAGCAGCTGA
gacacatcattttaaacttaattgatatatatatgttctgatcttctttctgcagATTCTACCACCTAGGAAACTTCAAGCGTTTCTTCTGCGCCATAGCAGCTGAAGGAACCGATCTTCAGCTGCGTCTGTTAGAACCTTTTCTCAATGAG
ttctgat putative branch site (score: 3)
ttctgatcttctttct CT-rich tract
atcattttaaacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactttatgcatattatttgtatcaacatacatagagccttcatttttgtcatgctctaagagccatcatgcttcttgagtcttctttgtgcacagcagtatgatttgggacaactcagaagtgctaactattgagacacatcattttaaacttaattgatatatatatgttctgatcttctttctgcagATTCTACCACCTAGGAAACTTCAAGCGTTTCTTCTGCGCCATAGCAGCTGAAGGAACCGATCTTCAGCTGCGTCTGTTAGAACCTTTTCTCAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC