1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgtccttcccctgtagttgcatgggaattctgaaatattttagattgtttaacttcacctaaaatcatgacaatgagagaccacatcttgtttctccagGCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAACATTTGAAACGAAAAAATTTCAACGTTTGTGCCGTGTACTTTCTTGATTC
species | Oryza sativa |
transcript | LOC_Os03g21914.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAACTGGAGGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAG GCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAACEST: gi|58656588|gb|CK045268.1|CK045268
genomic: GCAACTGGATGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAGgtaactttct ... gtttctccagGCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAAC
EST: GCAACTGGATGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAG GCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAACEST: gi|27546018|gb|CA764157.2|CA764157
genomic: GCAACTGGATGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAGgtaactttct ... gtttctccagGCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAAC
EST: GCAACTGGATGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAG GCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAACEST: gi|33679512|gb|CF307751.1|CF307751
genomic: GCAACTGGATGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAGgtaactttct ... gtttctccagGCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAAC
EST: GCAACTGGAGGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAG GCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAACEST: gi|44673938|gb|CR287372.1|CR287372
genomic: GCAACTGGATGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAGgtaactttct ... gtttctccagGCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAAC
EST: GCAACTGGATGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAG GCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAACEST: gi|218503197|gb|FG958153.1|FG958153
genomic: GCAACTGGATGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAGgtaactttct ... gtttctccagGCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAAC
EST: GCAACTGGATGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAG GCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAACEST: gi|58671472|gb|CK060158.1|CK060158
genomic: GCAACTGGATGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAGgtaactttct ... gtttctccagGCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAAC
EST: GCAACTGGAGGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAG GCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAAC
genomic: GCAACTGGATGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAGgtaactttct ... gtttctccagGCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAAC
ttgtttaacttcacctaaaatcatgacaatgagagaccacatcttgtttctccagGCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAACATTTGAAACGAAAAAATTTCAACGTTTGTGCCGTGTACTTTCTTGATTC
acctaaa putative branch site (score: 10)
catcttgtttctcc putative PPT
taaaatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtccttcccctgtagttgcatgggaattctgaaatattttagattgtttaacttcacctaaaatcatgacaatgagagaccacatcttgtttctccagGCCAGATTGAACTCTTCACTCATGTCCCAGTTCTGCGTAACTTTGTTGAACATTTGAAACGAAAAAATTTCAACGTTTGTGCCGTGTACTTTCTTGATTC
- - - - -ccctgta
- - - - - - - - - tgcatgg
- - - - - - - - - - - - - -attctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaca