1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtctgtatatcattttgaagcaattatttttgggtgctatgttttttgtcttacaattaagctttctcttcagGTAAGTTGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGGAGACAACTGAGCCTGCTATTTGTTTGAGCGAGG
species | Oryza sativa |
transcript | LOC_Os03g21720.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATGTCACAATACTGCCAACCCTTGTCATCAACAACAGGCAATATCGAG GTAAGTTGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGGEST: gi|157650097|gb|EX449731.1|EX449731
genomic: AGATGTCACAATACTGCCAACCCTTGTCATCAACAACAGGCAATATCGAGgtctgtatat ... ttctcttcagGTAAGTTGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGG
EST: ATACTGCCAACCCTTGTCATCAACAACAGGCAATATCGAG GTAAGTCGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGGEST: gi|29665176|gb|CB661451.1|CB661451
genomic: ATACTGCCAACCCTTGTCATCAACAACAGGCAATATCGAGgtctgtatat ... ttctcttcagGTAAGTTGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGG
EST: AGATGTCACAATACTGCCAACCCTTGTCATCAACAACAGGCAATATCGAG GTAAGTTGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGGEST: gi|29684200|gb|CB680475.1|CB680475
genomic: AGATGTCACAATACTGCCAACCCTTGTCATCAACAACAGGCAATATCGAGgtctgtatat ... ttctcttcagGTAAGTTGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGG
EST: AGATGTCACAATACTGCCAACCCTTGTCATCAACAACAGGCAATATCGAG GTAAGTTGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGGEST: gi|58692052|gb|CK080739.1|CK080739
genomic: AGATGTCACAATACTGCCAACCCTTGTCATCAACAACAGGCAATATCGAGgtctgtatat ... ttctcttcagGTAAGTTGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGG
EST: AGATGTCACAATACTGCCAACCCTTGTCATCAACAACAGGCAATATCGAG GTAAGTTGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGGEST: gi|88377023|gb|CI597807.1|CI597807
genomic: AGATGTCACAATACTGCCAACCCTTGTCATCAACAACAGGCAATATCGAGgtctgtatat ... ttctcttcagGTAAGTTGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGG
EST: AGATGTCACAATACTGCCAACCCTTGTCATCAACAACAGGCAATATCGAG GTAAGTTGGACAAATCTGC-GTGCTCAAAGCAGTCTGCGCAGGATTTGAGGEST: gi|55411780|gb|CV724156.1|CV724156
genomic: AGATGTCACAATACTGCCAACCCTTGTCATCAACAACAGGCAATATCGAGgtctgtatat ... ttctcttcagGTAAGTTGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGG
EST: AGATGTCACAATACTGCCAACCCTTGTCATCAACAACAGGCAATATCGAG GTAAGTTGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGG
genomic: AGATGTCACAATACTGCCAACCCTTGTCATCAACAACAGGCAATATCGAGgtctgtatat ... ttctcttcagGTAAGTTGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGG
agcaattatttttgggtgctatgttttttgtcttacaattaagctttctcttcagGTAAGTTGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGGAGACAACTGAGCCTGCTATTTGTTTGAGCGAGG
gtcttac putative branch site (score: 47)
ctttctcttc putative PPT
tatgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtatatcattttgaagcaattatttttgggtgctatgttttttgtcttacaattaagctttctcttcagGTAAGTTGGACAAATCTGCCGTGCTCAAAGCAGTCTGCGCAGGATTTGAGGAGACAACTGAGCCTGCTATTTGTTTGAGCGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA