1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttctttttttaatctttctaaatgtcatatttgctgaaaggagacttcagttttgactttctttatctgcacttatttttactgcagAAGTACCGCACAGCTCGCTACAAGCCAGACCTATCAGAAG
species | Oryza sativa |
transcript | LOC_Os03g21240.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
gctgaaaggagacttcagttttgactttctttatctgcacttatttttactgcagAAGTACCGCACAGCTCGCTACAAGCCAGACCTATCAGAAG
ttttgac putative branch site (score: 17)
cttattttt putative PPT
acttattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctttttttaatctttctaaatgtcatatttgctgaaaggagacttcagttttgactttctttatctgcacttatttttactgcagAAGTACCGCACAGCTCGCTACAAGCCAGACCTATCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC