1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaggttttcgtttcagctctcctgtgcttcttttttctgatgaattattttcagtgaagcttttgcatcccataactgatggtcatcaatcataatctctctcagCTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTTTATACTGTCTCCTAGTCTTTTCTCTGGAG
species | Oryza sativa |
transcript | LOC_Os03g20640.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCA CTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTEST: gi|88571218|gb|CI662591.1|CI662591
genomic: AGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCAgtaggttttc ... tctctctcagCTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGT
EST: AGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCA CTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTEST: gi|29663267|gb|CB659542.1|CB659542
genomic: AGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCAgtaggttttc ... tctctctcagCTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGT
EST: AGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCA CTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTEST: gi|88571155|gb|CI662528.1|CI662528
genomic: AGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCAgtaggttttc ... tctctctcagCTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGT
EST: AGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCA CTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTEST: gi|86908184|gb|CI300665.1|CI300665
genomic: AGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCAgtaggttttc ... tctctctcagCTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGT
EST: AGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCA CTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTEST: gi|88353819|gb|CI634610.1|CI634610
genomic: AGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCAgtaggttttc ... tctctctcagCTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGT
EST: AGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCA CTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGT
genomic: AGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCAgtaggttttc ... tctctctcagCTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGT
tcagtgaagcttttgcatcccataactgatggtcatcaatcataatctctctcagCTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTTTATACTGTCTCCTAGTCTTTTCTCTGGAG
aactgat putative branch site (score: 45)
tctctctc putative PPT
aatcataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttttcgtttcagctctcctgtgcttcttttttctgatgaattattttcagtgaagcttttgcatcccataactgatggtcatcaatcataatctctctcagCTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTTTATACTGTCTCCTAGTCTTTTCTCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC