Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttttgaatttttgttaattcgtttaggcttttgttatcttgtgtttgcacttttttacaaaaaaaaaaaaccagttcctatttgttattataatttcttcggttcattaagttttttctttgctaattttgcattttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAACGAGCAAAATGCGGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAG

Basic information

species Oryza sativa
transcript LOC_Os03g18510.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g18510.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G083262_T02 (Zea mays), 3'ss of exon 4
gtaagttttttgaatttttgttaattcgtttaggcttttgttatcttgtgtttgcacttttttacaaaaaaaaaaaaccagttcctatttgttattataatttcttcggttcattaagttttttctttgctaattttgcattttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAACGAGCAAAATGCGGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAG
                              || | | || | | | | ||||    ||||| ||   | |       |||  ||     ||||| | |  | | | |  |    |||          ||   ||  |  || |   |||||||| |||||| | ||||| || || |||   || || || ||  |||| |  |||||||| || ||||| |||||||||||||||||||||||||||||||
-----------------------------gtaagttattttcagcatctgttaattcttttatatttata----ttcccatctcaagcatgttagtcttctgtatgca-tgttctaaaaccaaaagctgtggatact--atctggaaaacagGTTAGTGAGCGGGAAGACAAGCTATTCCTCGACCAGATTGATTCCCTAATGGAGCAAAACGCAGAGGTCGATGGTGATGCTGACAGTGAAGAGGAGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88977639|gb|CI384121.1|CI384121
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|89181133|gb|CI045216.1|CI045216
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88837938|gb|CI371516.1|CI371516
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGCTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88221904|gb|CI221860.1|CI221860
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|86859687|gb|CI345366.1|CI345366
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88200098|gb|CI199948.1|CI199948
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|87028029|gb|CI257189.1|CI257189
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88966659|gb|CI365882.1|CI365882
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|29615907|gb|CB620919.1|CB620919
EST:     AGATCGAGAATCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|86254774|gb|CI061085.1|CI061085
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|86495831|gb|CI138464.1|CI138464
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88506661|gb|CI434167.1|CI434167
EST:     AGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|86418328|gb|CI032537.1|CI032537
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88254535|gb|CI353359.1|CI353359
EST:     TAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: TAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88908211|gb|CI090806.1|CI090806
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88846491|gb|CI373259.1|CI373259
EST:     TCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: TCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88216977|gb|CI216681.1|CI216681
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88835018|gb|CI370321.1|CI370321
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|86498995|gb|CI141628.1|CI141628
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|86865341|gb|CI330867.1|CI330867
EST:     GATCGAGAAGCACAAGGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: GATCGAGAAGCACAA-GGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|86538554|gb|CI178760.1|CI178760
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|86888073|gb|CI297890.1|CI297890
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88273539|gb|CI393945.1|CI393945
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|86490168|gb|CI132801.1|CI132801
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88450953|gb|CI531548.1|CI531548
EST:     GCACCGAGAGCT                         NTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: GCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|22305547|gb|BQ906769.1|BQ906769
EST:     AGATCGAGAATCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGA-CT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88991140|gb|CI108527.1|CI108527
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88989126|gb|CI042239.1|CI042239
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88534658|gb|CI463399.1|CI463399
EST:     AGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGGATAAACTGTTCAATGAGCACATAGAAACCCTTAA
genomic: AGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAA-GATAAACTGTTCAATGAGCACATAGAAACCCTTAA
EST: gi|86513048|gb|CI155681.1|CI155681
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|3767755|gb|AU031782.1|AU031782
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGNAGTGAGAGAGAAGATAAACTGTTCAATGGAGCACATAGAAACCCTTA
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTG-AGTGAGAGAGAAGATAAACTGTTCAATG-AGCACATAGAAACCCTTA
EST: gi|88451110|gb|CI534103.1|CI534103
EST:     AGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88202270|gb|CI202625.1|CI202625
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88983924|gb|CI250666.1|CI250666
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|4714850|gb|AU055967.1|AU055967
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88960582|gb|CI006543.1|CI006543
EST:     AGATCGAGAAGCGCAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88852368|gb|CI374136.1|CI374136
EST:     GGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: GGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|86537961|gb|CI178167.1|CI178167
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88488326|gb|CI425597.1|CI425597
EST:     GAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: GAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|89176760|gb|CI013333.1|CI013333
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88413263|gb|CI523824.1|CI523824
EST:     TAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: TAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88986674|gb|CI033817.1|CI033817
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|29615906|gb|CB620918.1|CB620918
EST:     AGATCGAGAATCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|86502170|gb|CI144803.1|CI144803
EST:     GATCGAGAAGCACCAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: GATCGAGAAGCA-CAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|3767754|gb|AU031781.1|AU031781
EST:     CGAGAAGCACAAGGGAAAAGTTGATANTTAAGGAAGCACCGAGAGCT                         NTGAGTGAGAGAGAAGATAAACTGTTCCAATGAGCCACATAGAAACCCTTA
genomic: CGAGAAGCACAAGGG-AAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTT-CAATGAG-CACATAGAAACCCTTA
EST: gi|88831641|gb|CI369323.1|CI369323
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTCTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|86413314|gb|CI067719.1|CI067719
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88969644|gb|CI383147.1|CI383147
EST:     TTGATAGTTAAGGAAGCACCGAGAGGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAA
genomic: TTGATAGTTAAGGAAGCACCGAGA-GCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAA
EST: gi|88524987|gb|CI453604.1|CI453604
EST:     TTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: TTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|86537698|gb|CI177904.1|CI177904
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|29615940|gb|CB620952.1|CB620952
EST:     AGATCGAGAATCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|86412816|gb|CI067221.1|CI067221
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|87018064|gb|CI275878.1|CI275878
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|218497968|gb|FG969492.1|FG969492
EST:     AGATCGAGAATCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTA
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTA
EST: gi|88835157|gb|CI370460.1|CI370460
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|86834347|gb|CI344107.1|CI344107
EST:     AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: AGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
EST: gi|88366613|gb|CI556397.1|CI556397
EST:     GAAGCACCGAGAGCT                         GTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC
genomic: GAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 72 (downstream exon)
Score: 58

GACCAAGGCATTTCAGTTCTCACTGATGCAATTAAAGCTTGCACAGCTGAGATCGAGAAGCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTgtaagttttt ... ttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAACGAGCAAAATGCGGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatttcttcggttcattaagttttttctttgctaattttgcattttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAACGAGCAAAATGCGGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAG
                              tgctaat  putative branch site (score: 58)
                                 taattttgcattttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttttttgaatttttgttaattcgtttaggcttttgttatcttgtgtttgcacttttttacaaaaaaaaaaaaccagttcctatttgttattataatttcttcggttcattaagttttttctttgctaattttgcattttataaacagGTGAGTGAGAGAGAAGATAAACTGTTCAATGAGCACATAGAAACCCTTAACGAGCAAAATGCGGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA